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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0202500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0395) R2 : 0.908
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 5.58 (0.0831) R2dN8 : 1.17 R2N8 : 0.908
σ : 0.743
deviance : 253.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
219.42 0.696 3.06 0.47 0.605 3.23 0.339 5.82 5.65 5.37 17.82 973 -- --
228.15 0.703 3.01 0.581 0.562 0.777 0.361 -- 5.71 5.13 19.87 1202 -- --
218.46 0.688 3.07 0.472 0.578 3.55 -- 6.48 5.61 5.64 17.04 758 -- --
227.36 0.702 3 0.598 0.582 0.929 -- -- 5.69 5.61 19.58 1184 -- --
235.75 0.715 3.07 0.48 -- 4.35 -- 8.24 5.65 -- 16.7 586 -- --
231.59 0.713 3.02 0.4 0.575 -- 0.262 -- 5.61 5.93 -- -- -- --
231.75 0.713 3.02 0.402 0.577 -- -- -- 5.61 5.87 -- -- -- --
245.34 0.73 3.02 0.57 -- 0.679 -- -- 5.69 -- 20.26 912 -- --
234.38 0.713 3.03 -- 0.591 0.54 -- -- 5.58 5.69 17.99 984 -- --
248.99 0.737 3.03 0.42 -- -- -- -- 5.63 -- -- -- -- --
236.02 0.719 3.03 -- 0.583 -- -- -- 5.57 5.83 -- -- -- --
248.74 0.735 3.02 -- -- 0.512 -- -- 5.67 -- 29.7 365 -- --
253.63 0.743 3.04 -- -- -- -- -- 5.58 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.10 temperature 20.0 720 > th dose independent rect. 7 10
2 215.05 temperature 20.0 720 > th dose independent rect. 7 2
3 216.06 temperature 20.0 720 > th dose independent rect. 7 8
5 216.26 wind 1.0 720 > th dose independent rect. 7 2
6 216.47 temperature 20.0 720 > th dose independent rect. 7 4
7 216.54 temperature 20.0 720 < th dose independent rect. 7 1
8 216.93 temperature 20.0 720 > th dose independent rect. 7 12
9 216.97 temperature 20.0 1440 < th dose dependent rect. 22 1
11 217.02 temperature 20.0 1440 < th dose dependent rect. 12 1
12 217.08 temperature 20.0 1440 > th dose independent rect. 12 1
13 217.15 humidity 90.0 1440 < th dose independent rect. 11 2
14 217.16 temperature 25.0 30 > th dose independent rect. 5 2
15 217.17 temperature 20.0 270 < th dose dependent rect. 7 1
17 217.55 temperature 20.0 720 < th dose dependent rect. 7 10
22 217.62 temperature 20.0 1440 < th dose independent rect. 12 1
29 218.04 temperature 20.0 1440 < th dose dependent rect. 7 17
33 218.11 temperature 20.0 1440 < th dose dependent rect. 9 15
34 218.13 temperature 20.0 1440 < th dose dependent rect. 12 8
38 218.17 humidity 90.0 1440 > th dose dependent rect. 11 2
41 218.21 temperature 20.0 1440 < th dose dependent rect. 19 1
50 218.33 humidity 90.0 1440 > th dose independent rect. 11 2
58 218.51 radiation 1.0 30 > th dose dependent rect. 17 14
60 218.55 temperature 20.0 720 > th dose independent rect. 7 6
68 218.69 wind 9.0 4320 > th dose independent rect. 3 1
100 218.69 radiation 1.0 30 > th dose independent rect. 18 13
101 218.69 wind 9.0 4320 > th dose dependent rect. 3 1
162 219.02 temperature 20.0 1440 < th dose dependent sin 20 NA
163 219.04 temperature 20.0 720 < th dose independent rect. 7 9
165 219.04 wind 3.0 10 < th dose dependent rect. 5 8
173 219.14 radiation 1.0 10 > th dose dependent rect. 5 2
186 219.17 wind 1.0 720 > th dose independent rect. 7 4
196 219.25 wind 1.0 720 < th dose dependent rect. 7 3
202 219.30 wind 1.0 720 < th dose dependent rect. 7 1
206 219.32 radiation 1.0 90 > th dose independent rect. 5 2
223 219.36 wind 1.0 43200 < th dose dependent rect. 24 10
240 219.42 wind 1.0 43200 < th dose dependent rect. 24 5
241 219.43 temperature 15.0 90 > th dose dependent rect. 4 3
249 219.53 temperature 20.0 1440 < th dose independent rect. 17 1
270 219.72 temperature 20.0 1440 > th dose independent rect. 17 1
274 219.78 temperature 20.0 1440 > th dose independent rect. 12 6
287 219.89 temperature 20.0 1440 < th dose independent rect. 12 6
300 219.99 temperature 15.0 90 > th dose independent rect. 7 21
303 220.00 wind 1.0 720 < th dose independent rect. 7 1
324 220.21 wind 1.0 43200 < th dose dependent rect. 1 2
349 220.40 wind 3.0 720 > th dose independent rect. 19 2
359 220.47 wind 1.0 90 > th dose independent rect. 5 2
371 220.52 wind 1.0 720 < th dose independent rect. 6 4
384 220.65 wind 1.0 43200 < th dose independent rect. 7 3
394 220.70 wind 1.0 43200 < th dose independent rect. 24 10
398 220.72 wind 1.0 43200 > th dose independent rect. 24 10
403 220.76 wind 1.0 43200 > th dose independent rect. 7 3
404 220.78 wind 1.0 43200 < th dose dependent rect. 3 7
405 220.78 radiation 1.0 30 < th dose dependent rect. 21 23
410 220.81 wind 1.0 43200 > th dose independent rect. 3 6
414 220.82 precipitation 0.1 90 < th dose independent rect. 4 3
415 220.82 precipitation 0.1 90 < th dose dependent rect. 4 3
420 220.84 radiation 10.0 90 < th dose independent rect. 4 3
426 220.86 wind 1.0 43200 > th dose independent rect. 8 1
433 220.89 wind 5.0 90 < th dose independent rect. 4 3
441 220.92 atmosphere 1015.0 90 < th dose dependent rect. 4 3
442 220.93 humidity 70.0 90 > th dose independent rect. 4 3
456 220.95 temperature 10.0 90 > th dose independent rect. 4 3
458 220.95 temperature 30.0 90 < th dose independent rect. 4 3
459 220.95 humidity 50.0 90 > th dose independent rect. 4 3
461 220.95 atmosphere 995.0 90 > th dose independent rect. 4 3
462 220.95 atmosphere 1015.0 90 < th dose independent rect. 4 3
468 220.95 precipitation 0.1 90 < th dose independent rect. 7 21
470 220.95 precipitation 0.1 90 < th dose dependent rect. 7 21
472 220.97 radiation 1.0 30 > th dose independent sin 10 NA
473 220.98 wind 1.0 43200 > th dose independent rect. 5 5
478 220.99 wind 1.0 30 > th dose independent rect. 7 22
481 221.01 wind 1.0 43200 < th dose independent rect. 5 5
483 221.03 wind 1.0 43200 < th dose independent rect. 24 4
485 221.03 wind 1.0 43200 < th dose dependent rect. 1 18
486 221.04 radiation 30.0 720 < th dose independent rect. 7 2
487 221.04 humidity 60.0 90 > th dose independent rect. 16 12
493 221.07 radiation 1.0 30 < th dose independent rect. 18 14
501 221.08 radiation 30.0 90 < th dose independent rect. 7 21
503 221.09 temperature 20.0 90 > th dose independent rect. 7 12
510 221.10 wind 1.0 720 < th dose independent rect. 4 6
517 221.14 radiation 10.0 90 < th dose independent rect. 4 5
519 221.14 wind 9.0 90 < th dose independent rect. 7 21
520 221.14 radiation 1.0 30 < th dose independent rect. 21 23
522 221.15 radiation 1.0 30 < th dose dependent rect. 18 14
539 221.22 wind 1.0 43200 < th dose independent rect. 3 9
542 221.23 wind 1.0 43200 < th dose dependent sin 6 NA
544 221.25 wind 1.0 43200 < th dose dependent rect. 8 1
550 221.27 temperature 30.0 720 < th dose independent rect. 7 2
556 221.29 atmosphere 995.0 720 > th dose dependent rect. 19 2
575 221.37 radiation 10.0 10 < th dose independent rect. 5 4
582 221.40 wind 1.0 720 > th dose independent rect. 19 4
583 221.40 radiation 1.0 30 > th dose independent rect. 17 23
591 221.43 wind 1.0 43200 > th dose independent rect. 24 4
602 221.47 radiation 1.0 30 < th dose independent sin 10 NA
622 221.52 wind 3.0 43200 < th dose dependent rect. 7 5
633 221.56 wind 1.0 43200 < th dose independent rect. 8 1
634 221.56 humidity 60.0 90 > th dose independent rect. 7 21
638 221.57 radiation 40.0 90 < th dose dependent rect. 4 3
701 221.69 temperature 20.0 30 > th dose independent rect. 7 10
702 221.69 wind 9.0 90 < th dose dependent rect. 4 3
712 221.73 wind 1.0 43200 < th dose independent sin 6 NA
718 221.73 radiation 1.0 30 < th dose dependent rect. 18 12
737 221.78 wind 1.0 43200 > th dose independent rect. 1 15
740 221.79 temperature 20.0 10 < th dose independent rect. 6 2
743 221.79 temperature 20.0 10 < th dose independent rect. 6 12
755 221.81 temperature 20.0 10 < th dose independent rect. 6 5
794 221.85 temperature 20.0 30 < th dose dependent rect. 6 11
799 221.86 wind 1.0 43200 > th dose independent rect. 3 14
801 221.86 wind 1.0 720 < th dose dependent rect. 4 6
831 221.91 wind 1.0 30 > th dose independent rect. 18 11
879 221.98 wind 1.0 43200 > th dose independent sin 4 NA
890 221.99 wind 1.0 43200 > th dose independent rect. 1 19
894 222.00 temperature 20.0 30 < th dose dependent rect. 6 4
912 222.02 atmosphere 995.0 90 > th dose dependent rect. 19 12
918 222.03 wind 1.0 14400 > th dose independent rect. 3 1
919 222.03 wind 1.0 30 > th dose independent rect. 21 8
932 222.04 radiation 1.0 43200 < th dose dependent rect. 19 1
940 222.05 wind 9.0 10 < th dose dependent rect. 5 13
944 222.06 radiation 1.0 30 < th dose independent rect. 18 12
954 222.07 temperature 20.0 30 < th dose dependent rect. 6 2
958 222.08 wind 1.0 43200 > th dose independent rect. 3 17
968 222.09 atmosphere 1005.0 30 > th dose dependent rect. 16 3