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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0202300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Curculin-like (mannose-binding) lectin domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.64 (0.0371) R2 : 0.219
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.855 (0.103) R2dE : 0.144 R2E : -0.0863
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.895 (0.0846) R2dN8 : 0.306 R2N8 : 0.0753
σ : 0.679
deviance : 212.54
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.99
memory length : 10145
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
191.25 0.65 3.84 -2.45 0.556 2.35 0.25 -14.5 -0.551 8.55 30.05 2684 -- --
218.12 0.688 3.62 -0.305 0.346 0.991 1.45 -- -0.83 8.28 20.3 4990 -- --
191.45 0.644 3.85 -2.45 0.556 2.35 -- -14.5 -0.552 8.53 30.05 2684 -- --
199.3 0.658 3.63 0.055 0.496 0.833 -- -- -0.922 7.93 26.95 10033 -- --
208.63 0.673 3.85 -2.37 -- 2.28 -- -14.1 -0.537 -- 30 2709 -- --
224.69 0.703 3.55 0.496 0.48 -- 0.279 -- -0.539 7.98 -- -- -- --
224.92 0.702 3.55 0.504 0.48 -- -- -- -0.539 7.95 -- -- -- --
212.35 0.679 3.63 0.0965 -- 0.82 -- -- -0.87 -- 27 10140 -- --
199.12 0.657 3.63 -- 0.494 0.86 -- -- -0.909 8.38 27 10143 -- --
237.47 0.72 3.56 0.509 -- -- -- -- -0.533 -- -- -- -- --
231.62 0.712 3.56 -- 0.483 -- -- -- -0.595 7.88 -- -- -- --
212.54 0.679 3.64 -- -- 0.855 -- -- -0.895 -- 26.99 10145 -- --
244.3 0.73 3.57 -- -- -- -- -- -0.59 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.14 humidity 50 4320 > th dose independent rect. 17 17
2 188.84 humidity 60 4320 < th dose dependent rect. 17 16
3 189.43 humidity 50 4320 > th dose independent rect. 16 19
4 189.99 humidity 50 4320 < th dose independent rect. 16 19
7 190.68 humidity 50 4320 < th dose dependent rect. 16 19
8 191.26 humidity 60 4320 < th dose dependent rect. 17 2
23 191.97 humidity 50 4320 < th dose independent rect. 17 17
24 192.14 wind 7 14400 < th dose independent rect. 12 1
26 192.19 wind 5 14400 > th dose dependent rect. 12 1
30 192.71 humidity 50 4320 > th dose independent rect. 17 12
31 192.71 humidity 50 4320 > th dose independent rect. 17 14
32 192.74 humidity 50 4320 > th dose independent rect. 17 1
33 192.79 humidity 50 4320 > th dose independent rect. 17 3
34 192.80 wind 7 14400 > th dose independent rect. 12 1
43 192.90 temperature 30 1440 > th dose independent sin 6 NA
50 192.95 humidity 50 4320 < th dose independent rect. 17 1
86 192.98 radiation 1 4320 > th dose independent rect. 18 1
99 193.03 radiation 1 4320 < th dose independent rect. 18 9
110 193.08 radiation 1 4320 < th dose independent rect. 18 1
132 193.19 radiation 1 4320 < th dose independent rect. 18 7
152 193.22 temperature 30 4320 > th dose dependent rect. 17 17
155 193.25 temperature 30 1440 < th dose independent sin 6 NA
169 193.45 humidity 50 4320 < th dose independent sin 10 NA
172 193.48 radiation 10 1440 < th dose dependent rect. 18 11
175 193.51 wind 9 43200 < th dose dependent rect. 11 2
177 193.54 temperature 30 4320 > th dose independent rect. 18 16
180 193.63 temperature 30 1440 > th dose independent rect. 18 21
205 193.84 temperature 30 4320 > th dose dependent rect. 17 2
227 193.86 radiation 10 1440 < th dose dependent rect. 18 9
237 193.94 radiation 10 1440 < th dose dependent rect. 18 1
238 193.95 temperature 30 4320 < th dose independent rect. 18 16
239 193.96 humidity 50 4320 < th dose dependent rect. 16 22
240 193.98 temperature 25 4320 > th dose dependent rect. 6 3
275 194.12 temperature 30 1440 > th dose independent rect. 8 7
300 194.21 temperature 25 4320 > th dose dependent rect. 8 1
326 194.36 humidity 50 4320 > th dose independent sin 11 NA
329 194.39 temperature 30 1440 < th dose independent rect. 18 21
333 194.42 temperature 30 1440 > th dose independent rect. 10 1
339 194.52 temperature 30 1440 > th dose independent rect. 13 23
343 194.57 radiation 30 14400 > th dose dependent rect. 16 1
368 194.70 temperature 30 1440 < th dose independent rect. 4 11
374 194.75 temperature 30 1440 < th dose independent rect. 8 7
388 194.75 temperature 30 1440 > th dose independent rect. 15 21
391 194.76 temperature 30 1440 < th dose independent rect. 22 17
392 194.76 temperature 30 1440 < th dose independent rect. 20 19
395 194.77 radiation 10 1440 < th dose dependent rect. 18 7
401 194.80 temperature 30 1440 < th dose independent rect. 10 1
408 194.81 temperature 30 1440 < th dose independent rect. 15 21
416 194.86 temperature 30 1440 > th dose dependent rect. 10 1
431 194.87 wind 1 14400 < th dose independent rect. 9 1
435 194.92 temperature 30 1440 > th dose independent no NA NA
436 194.92 temperature 30 1440 > th dose independent rect. 8 11
538 195.02 radiation 1 1440 > th dose dependent rect. 18 1
573 195.12 wind 1 14400 > th dose independent rect. 9 1
578 195.12 temperature 30 1440 < th dose independent rect. 4 7
610 195.19 temperature 30 4320 > th dose dependent sin 10 NA
636 195.29 temperature 30 1440 < th dose independent rect. 8 3
665 195.36 temperature 30 1440 < th dose independent rect. 4 17
667 195.36 temperature 30 1440 < th dose independent rect. 4 19
675 195.38 temperature 30 1440 < th dose independent rect. 4 15
677 195.38 temperature 30 1440 < th dose independent rect. 8 18
681 195.39 temperature 30 1440 < th dose independent rect. 8 13
682 195.39 temperature 30 1440 < th dose independent rect. 8 15
704 195.40 temperature 30 1440 < th dose independent rect. 8 22
707 195.40 temperature 30 1440 < th dose independent rect. 22 23
711 195.41 temperature 30 1440 < th dose independent rect. 8 11
725 195.42 temperature 30 1440 < th dose independent no NA NA
726 195.42 temperature 30 1440 > th dose independent rect. 8 3
750 195.42 temperature 30 1440 < th dose independent rect. 22 21
755 195.42 temperature 30 1440 < th dose independent rect. 20 23
756 195.42 temperature 30 1440 < th dose independent rect. 24 23
775 195.44 temperature 30 4320 > th dose independent rect. 18 1
817 195.46 temperature 30 1440 < th dose independent rect. 20 15
820 195.47 temperature 30 1440 < th dose independent rect. 22 13
849 195.56 wind 3 43200 < th dose independent rect. 2 2
878 195.58 temperature 30 1440 < th dose independent rect. 24 12