Os04g0196600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF563 family protein.
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Os04g0196600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF563 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.18 | 0.405 | 8.94 | 1.38 | 0.375 | -1.09 | -0.27 | -1.72 | 1.48 | 7.59 | 26.54 | 12420 | -- | -- |
| 75.86 | 0.406 | 8.84 | 2.04 | 0.384 | -1.27 | -0.203 | -- | 1.74 | 7.62 | 26.28 | 12484 | -- | -- |
| 74.26 | 0.401 | 8.92 | 1.5 | 0.416 | -1.15 | -- | -1.54 | 1.58 | 8.11 | 25.99 | 13150 | -- | -- |
| 75.99 | 0.406 | 8.85 | 2.05 | 0.381 | -1.28 | -- | -- | 1.75 | 7.68 | 26.13 | 12492 | -- | -- |
| 81.77 | 0.421 | 8.93 | 1.55 | -- | -1.16 | -- | -1.34 | 1.56 | -- | 26.16 | 12344 | -- | -- |
| 135.08 | 0.545 | 8.98 | 1.39 | 0.419 | -- | -0.0401 | -- | 1.15 | 8.49 | -- | -- | -- | -- |
| 135.08 | 0.544 | 8.98 | 1.39 | 0.419 | -- | -- | -- | 1.15 | 8.51 | -- | -- | -- | -- |
| 82.6 | 0.423 | 8.83 | 2.13 | -- | -1.41 | -- | -- | 1.89 | -- | 26.1 | 13707 | -- | -- |
| 162.35 | 0.593 | 8.97 | -- | 0.42 | -0.694 | -- | -- | 1.23 | 8.09 | 29.31 | 11771 | -- | -- |
| 144.9 | 0.562 | 8.99 | 1.39 | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
| 185.66 | 0.637 | 9.01 | -- | 0.425 | -- | -- | -- | 1 | 8.27 | -- | -- | -- | -- |
| 171.24 | 0.609 | 8.98 | -- | -- | -0.759 | -- | -- | 1.22 | -- | 28.71 | 10904 | -- | -- |
| 195.65 | 0.653 | 9.02 | -- | -- | -- | -- | -- | 1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.17 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 5 | 73.01 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 11 | 73.45 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 12 | 73.53 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 16 | 73.59 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 17 | 73.61 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 22 | 73.71 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 23 | 73.71 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 16 | 1 |
| 27 | 73.81 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 31 | 73.98 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 33 | 74.03 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 47 | 74.32 | wind | 3.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 54 | 74.53 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 63 | 74.60 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 4 |
| 77 | 74.73 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 20 |
| 88 | 74.83 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 20 | 22 |
| 89 | 74.84 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 91 | 74.85 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 22 | 20 |
| 104 | 74.88 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 14 |
| 112 | 74.90 | wind | 3.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 125 | 74.91 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 22 |
| 128 | 74.92 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 8 |
| 129 | 74.92 | temperature | 25.0 | 14400 | > th | dose dependent | no | NA | NA |
| 214 | 75.00 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 6 | 13 |
| 233 | 75.01 | temperature | 25.0 | 14400 | > th | dose dependent | sin | 18 | NA |
| 245 | 75.02 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 249 | 75.02 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 17 |
| 296 | 75.07 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 13 | 6 |
| 304 | 75.08 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 14 | 4 |
| 316 | 75.10 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 379 | 75.20 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 385 | 75.21 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 13 | 3 |
| 409 | 75.26 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 429 | 75.31 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 13 | 3 |
| 435 | 75.32 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 436 | 75.32 | wind | 3.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 487 | 75.45 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 490 | 75.45 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 510 | 75.50 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 511 | 75.50 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 515 | 75.51 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 549 | 75.62 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 552 | 75.62 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 603 | 75.76 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 639 | 75.85 | wind | 3.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 641 | 75.85 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 690 | 75.97 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 729 | 76.03 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 734 | 76.04 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 9 |
| 845 | 76.16 | temperature | 30.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 979 | 76.28 | temperature | 30.0 | 14400 | > th | dose independent | sin | 20 | NA |