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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0196500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.15 (0.0417) R2 : 0.119
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.69 (0.618) R2dE : 0.112 R2E : 0.104
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.22 (0.0879) R2dN8 : 0.0157 R2N8 : 0.00779
σ : 0.783
deviance : 282.91
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 1.112
memory length : 115
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.06
open length of G : 2.63

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
278.91 0.785 3.14 -0.103 0.328 4.63 -0.102 3.93 0.2 8.2 0.8998 115 8.08 2.16
277.73 0.776 3.14 -0.0987 0.31 4.49 -0.0125 -- 0.203 8.02 1.03 115 8.08 2.55
277.33 0.776 3.14 -0.0904 0.312 4.7 -- 3.8 0.206 8.09 0.9514 115 8.07 2.62
277.71 0.776 3.14 -0.096 0.309 4.51 -- -- 0.204 7.87 1.027 115 8.08 2.55
282.35 0.783 3.15 -0.0837 -- 4.81 -- 3.27 0.213 -- 1.033 115 8.09 2.55
308.26 0.823 3.15 -0.0984 0.424 -- 0.0452 -- 0.166 8.58 -- -- -- --
308.27 0.822 3.15 -0.0969 0.424 -- -- -- 0.166 8.59 -- -- -- --
282.67 0.783 3.15 -0.0959 -- 4.68 -- -- 0.209 -- 1.118 115 8.07 2.63
277.96 0.777 3.14 -- 0.309 4.53 -- -- 0.204 7.87 1.027 115 8.08 2.55
318.37 0.834 3.16 -0.0955 -- -- -- -- 0.17 -- -- -- -- --
308.52 0.822 3.14 -- 0.424 -- -- -- 0.177 8.6 -- -- -- --
282.91 0.783 3.15 -- -- 4.69 -- -- 0.22 -- 1.112 115 8.06 2.63
318.61 0.833 3.15 -- -- -- -- -- 0.181 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 283.61 wind 1.0 90 < th dose dependent rect. 8 2
3 283.90 wind 1.0 90 < th dose independent rect. 8 1
4 285.94 radiation 10.0 90 < th dose dependent rect. 7 3
17 291.70 wind 1.0 270 < th dose dependent rect. 8 16
21 292.00 radiation 10.0 90 < th dose independent rect. 7 3
28 292.84 radiation 10.0 90 < th dose independent rect. 9 1
33 293.14 radiation 10.0 10 < th dose independent rect. 8 2
39 293.41 temperature 25.0 10 > th dose independent rect. 5 14
54 293.79 wind 7.0 1440 > th dose dependent rect. 4 4
55 293.93 wind 7.0 1440 > th dose dependent rect. 4 1
60 293.95 wind 7.0 1440 > th dose independent rect. 4 1
63 294.11 temperature 20.0 10 > th dose dependent rect. 5 14
74 294.49 wind 3.0 90 < th dose independent rect. 21 14
83 294.87 wind 7.0 90 < th dose dependent rect. 21 14
101 295.17 wind 3.0 30 < th dose dependent rect. 5 21
108 295.31 precipitation 0.1 10 > th dose independent rect. 19 7
113 295.31 precipitation 0.1 10 > th dose dependent rect. 19 7
120 295.37 precipitation 0.1 10 > th dose independent rect. 23 3
122 295.37 precipitation 0.1 10 > th dose dependent rect. 23 3
124 295.39 wind 3.0 90 < th dose independent rect. 5 6
125 295.41 wind 1.0 270 < th dose independent rect. 5 2
127 295.46 wind 1.0 720 < th dose dependent rect. 4 3
131 295.52 precipitation 0.1 90 > th dose independent rect. 1 2
132 295.52 precipitation 0.1 90 > th dose dependent rect. 1 2
136 295.55 precipitation 0.1 10 > th dose independent rect. 1 1
146 295.55 precipitation 0.1 10 > th dose dependent rect. 1 1
158 295.61 precipitation 0.1 10 > th dose independent rect. 21 5
162 295.61 precipitation 0.1 10 > th dose dependent rect. 21 5
179 295.77 wind 3.0 30 < th dose dependent rect. 9 17
180 295.78 wind 1.0 270 < th dose independent rect. 8 16
188 295.92 wind 1.0 270 < th dose dependent sin 19 NA
189 295.93 wind 3.0 30 < th dose independent rect. 23 12
208 296.21 humidity 90.0 10 > th dose independent rect. 1 1
227 296.35 wind 7.0 90 < th dose dependent rect. 13 22
264 296.70 wind 9.0 1440 < th dose dependent rect. 4 1
265 296.71 precipitation 0.1 10 > th dose independent rect. 7 19
269 296.71 precipitation 0.1 10 > th dose dependent rect. 7 19
296 296.95 wind 7.0 90 < th dose dependent rect. 15 20
298 296.97 temperature 25.0 1440 > th dose independent rect. 10 2
321 297.19 wind 7.0 90 < th dose dependent rect. 23 12
323 297.26 temperature 25.0 1440 < th dose independent rect. 10 1
339 297.37 humidity 80.0 10 > th dose dependent rect. 1 1
357 297.49 wind 5.0 90 < th dose dependent rect. 3 23
370 297.66 wind 3.0 30 < th dose independent rect. 5 21
372 297.67 temperature 25.0 10 < th dose independent rect. 2 14
377 297.70 wind 1.0 1440 > th dose dependent rect. 4 1
390 297.83 humidity 80.0 10 > th dose independent rect. 7 3
394 297.86 wind 3.0 10 < th dose dependent rect. 10 9
396 297.89 humidity 80.0 90 > th dose independent rect. 7 2
397 297.89 atmosphere 1005.0 10 > th dose independent rect. 11 12
398 297.89 wind 3.0 90 < th dose independent rect. 3 23
399 297.89 humidity 80.0 270 > th dose dependent rect. 5 3
410 297.97 temperature 15.0 720 > th dose dependent rect. 4 4
419 298.03 temperature 20.0 10 > th dose dependent rect. 23 20
421 298.04 temperature 25.0 10 < th dose independent rect. 2 18
475 298.11 wind 3.0 10 < th dose dependent rect. 10 6
487 298.17 atmosphere 1015.0 10 < th dose independent rect. 11 23
495 298.19 wind 1.0 270 < th dose dependent rect. 12 12
496 298.20 wind 1.0 90 < th dose dependent rect. 8 7
497 298.21 wind 3.0 1440 < th dose independent rect. 4 1
510 298.27 wind 7.0 1440 > th dose dependent rect. 7 1
514 298.27 temperature 20.0 30 > th dose dependent rect. 5 21
515 298.28 wind 3.0 10 < th dose independent rect. 10 9
517 298.29 wind 1.0 270 < th dose dependent rect. 14 10
518 298.31 wind 5.0 1440 < th dose independent rect. 6 1
525 298.33 wind 1.0 90 < th dose dependent rect. 8 10
536 298.35 temperature 20.0 10 > th dose dependent rect. 21 22
540 298.37 wind 3.0 1440 > th dose independent rect. 4 1
549 298.40 wind 5.0 1440 > th dose independent rect. 6 1
551 298.40 wind 9.0 30 < th dose dependent rect. 13 13
555 298.44 temperature 25.0 10 > th dose independent sin 23 NA
560 298.46 wind 1.0 270 < th dose dependent rect. 17 7
569 298.50 temperature 25.0 10 < th dose independent rect. 2 22
571 298.50 temperature 20.0 30 > th dose dependent rect. 5 17
572 298.50 wind 9.0 90 < th dose dependent rect. 20 23
583 298.56 wind 1.0 270 < th dose dependent rect. 20 4
600 298.62 temperature 25.0 10 < th dose independent sin 0 NA
605 298.62 temperature 30.0 10 < th dose dependent rect. 2 22
606 298.62 wind 1.0 90 > th dose dependent rect. 17 23
617 298.68 wind 3.0 1440 > th dose dependent rect. 4 3
636 298.74 wind 7.0 90 < th dose dependent rect. 21 21
672 298.89 wind 3.0 90 > th dose independent rect. 18 22
680 298.92 humidity 70.0 720 > th dose dependent rect. 23 1
687 298.94 wind 3.0 30 > th dose independent rect. 19 19
693 298.95 wind 7.0 1440 < th dose independent rect. 2 3
703 298.98 wind 3.0 30 > th dose independent rect. 19 17
706 298.98 humidity 50.0 30 > th dose dependent rect. 21 14
717 299.02 radiation 10.0 10 < th dose independent rect. 7 19
726 299.05 temperature 25.0 10 > th dose independent rect. 5 17
728 299.05 temperature 20.0 30 > th dose dependent sin 23 NA
740 299.08 humidity 80.0 30 > th dose dependent rect. 6 4
742 299.09 radiation 40.0 14400 < th dose independent rect. 13 1
750 299.11 wind 3.0 30 < th dose independent rect. 9 17
753 299.12 wind 3.0 30 < th dose dependent sin 21 NA
768 299.14 humidity 50.0 1440 < th dose dependent rect. 16 22
770 299.15 temperature 30.0 30 < th dose dependent rect. 11 5
779 299.16 temperature 30.0 30 < th dose dependent rect. 11 7
789 299.19 wind 9.0 90 < th dose dependent rect. 5 13
792 299.21 wind 1.0 270 > th dose independent rect. 24 13
804 299.24 wind 7.0 1440 < th dose independent rect. 2 6
815 299.26 wind 3.0 10 < th dose independent rect. 10 6
823 299.27 temperature 30.0 720 < th dose dependent rect. 24 14
826 299.28 humidity 60.0 30 < th dose independent rect. 17 1
833 299.29 temperature 30.0 30 < th dose dependent rect. 2 14
834 299.29 temperature 10.0 30 > th dose dependent rect. 3 23
835 299.30 wind 7.0 14400 > th dose independent rect. 14 1
842 299.31 wind 1.0 30 < th dose dependent rect. 15 11
856 299.33 atmosphere 1015.0 720 < th dose independent rect. 17 19
857 299.34 radiation 20.0 14400 < th dose independent rect. 13 1
863 299.35 wind 3.0 90 < th dose independent rect. 21 18
869 299.36 humidity 90.0 720 < th dose independent rect. 24 6
871 299.36 wind 5.0 14400 > th dose dependent rect. 14 1
885 299.40 humidity 80.0 270 > th dose independent rect. 5 3
895 299.43 atmosphere 1015.0 270 < th dose independent rect. 7 22
910 299.46 atmosphere 1015.0 30 < th dose dependent rect. 13 13
915 299.47 temperature 25.0 10 > th dose independent rect. 21 22
918 299.47 wind 9.0 1440 < th dose dependent rect. 2 6
920 299.47 humidity 50.0 720 > th dose dependent rect. 22 10
923 299.47 wind 1.0 90 > th dose dependent rect. 8 22
945 299.53 wind 3.0 1440 > th dose independent rect. 2 6
950 299.53 temperature 30.0 720 < th dose dependent rect. 11 1
965 299.56 atmosphere 1010.0 90 < th dose dependent rect. 11 15
976 299.58 temperature 20.0 270 > th dose independent rect. 4 13
989 299.60 temperature 25.0 10 < th dose independent rect. 11 7
993 299.61 temperature 20.0 30 > th dose dependent rect. 3 23