Os04g0196300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0196300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.83 | 0.318 | 12.1 | -1.21 | 1.02 | 0.957 | -0.383 | 0.639 | -0.336 | 14.7 | 21.16 | 602 | -- | -- |
| 45.81 | 0.315 | 12.1 | -1.29 | 0.994 | 1.04 | -0.531 | -- | -0.363 | 14.5 | 21.98 | 588 | -- | -- |
| 46 | 0.316 | 12 | -1.26 | 1.05 | 0.938 | -- | 0.502 | -0.303 | 14.7 | 22.66 | 637 | -- | -- |
| 45.87 | 0.315 | 12.1 | -1.34 | 0.99 | 1.01 | -- | -- | -0.355 | 14.6 | 22.8 | 593 | -- | -- |
| 74.67 | 0.402 | 12 | -1.72 | -- | 1.79 | -- | -2.8 | -0.362 | -- | 24.76 | 259 | -- | -- |
| 65.96 | 0.381 | 12 | -1.1 | 1.2 | -- | -0.0593 | -- | -0.2 | 15.8 | -- | -- | -- | -- |
| 65.97 | 0.38 | 12 | -1.1 | 1.2 | -- | -- | -- | -0.2 | 15.8 | -- | -- | -- | -- |
| 76.58 | 0.408 | 12.1 | -1.41 | -- | 1.55 | -- | -- | -0.383 | -- | 24.23 | 267 | -- | -- |
| 88.57 | 0.438 | 12 | -- | 1.03 | 0.704 | -- | -- | -0.0779 | 15.1 | 26.38 | 582 | -- | -- |
| 145.77 | 0.564 | 12 | -1.15 | -- | -- | -- | -- | -0.232 | -- | -- | -- | -- | -- |
| 98.15 | 0.463 | 12 | -- | 1.23 | -- | -- | -- | -0.077 | 15.8 | -- | -- | -- | -- |
| 127.19 | 0.525 | 12 | -- | -- | 1.37 | -- | -- | -0.184 | -- | 24.78 | 268 | -- | -- |
| 180.94 | 0.628 | 12 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.21 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 2 | 45.23 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 20 |
| 4 | 45.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 19 |
| 62 | 46.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 14 |
| 87 | 46.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 88 | 46.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 91 | 46.23 | temperature | 20 | 720 | > th | dose dependent | sin | 21 | NA |
| 131 | 46.42 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 23 |
| 151 | 46.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 153 | 46.49 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 282 | 46.69 | temperature | 20 | 30 | > th | dose dependent | rect. | 14 | 19 |
| 330 | 46.86 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 6 |
| 414 | 47.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 415 | 47.04 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 7 |
| 444 | 47.12 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 18 |
| 486 | 47.25 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 487 | 47.26 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 21 |
| 514 | 47.32 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 11 |
| 542 | 47.37 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 13 |
| 568 | 47.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 618 | 47.57 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 23 |
| 646 | 47.63 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 14 |
| 670 | 47.67 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |
| 715 | 47.78 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 15 |
| 716 | 47.78 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 23 |
| 759 | 47.87 | temperature | 20 | 30 | > th | dose dependent | rect. | 14 | 10 |
| 774 | 47.89 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 902 | 48.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 918 | 48.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 943 | 48.21 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 958 | 48.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 971 | 48.25 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 3 |
| 980 | 48.27 | temperature | 30 | 720 | < th | dose independent | sin | 19 | NA |
| 983 | 48.27 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 5 |