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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0196200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Winged helix repressor DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.07 (0.084) R2 : 0.598
β1 : -6.45 (0.31) R2dD : 0.403 R2D : 0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.24 (0.265) R2dE : 0.233 R2E : 0.152
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.77 (0.18) R2dN8 : 0.115 R2N8 : 0.0566
σ : 1.57
deviance : 1136.26
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 80.08
memory length : 1423
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.8
open length of G : 18.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1122.57 1.57 6.05 -6.34 0.176 4.12 -2.19 0.602 -1.74 16.5 80.19 1416 15.9 18.3
1122.46 1.56 6.06 -6.43 0.18 4.21 -2.21 -- -1.73 16.5 79.84 1415 15.9 18.4
1132.96 1.57 6.05 -6.39 0.247 4.19 -- 0.689 -1.73 13.9 80.15 1409 15.8 18.4
1132.66 1.57 6.07 -6.44 0.266 4.37 -- -- -1.76 13.3 79.78 1408 15.8 18.7
1135.95 1.57 6.06 -6.41 -- 4.19 -- 0.47 -1.75 -- 79.8 1424 15.8 18.4
1738.35 1.95 6.13 -5.77 0.107 -- 3.4 -- -2.07 4.4 -- -- -- --
1767.83 1.97 6.13 -5.8 0.234 -- -- -- -2.09 7.9 -- -- -- --
1136.26 1.57 6.07 -6.45 -- 4.24 -- -- -1.77 -- 80.08 1423 15.8 18.5
2133.14 2.15 5.94 -- 0.27 4.72 -- -- -1.6 12.6 133.5 1428 15.7 18.4
1770.81 1.97 6.14 -5.79 -- -- -- -- -2.09 -- -- -- -- --
2653.36 2.41 5.99 -- 0.222 -- -- -- -1.44 9.83 -- -- -- --
2062.98 2.12 5.91 -- -- 5.36 -- -- -1.86 -- 149.4 28703 14.9 18.7
2656.31 2.41 6 -- -- -- -- -- -1.44 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1126.52 humidity 80 1440 < th dose dependent rect. 16 18
12 1146.26 humidity 70 1440 > th dose independent rect. 17 19
20 1154.06 humidity 70 1440 > th dose independent sin 11 NA
30 1158.09 humidity 70 1440 < th dose independent rect. 16 20
31 1158.90 humidity 80 1440 < th dose dependent sin 11 NA
51 1168.35 humidity 80 1440 < th dose dependent rect. 16 12
52 1168.49 humidity 70 1440 < th dose independent sin 11 NA
60 1169.53 humidity 80 1440 < th dose dependent rect. 16 4
94 1179.26 humidity 80 1440 < th dose dependent rect. 22 23
99 1179.80 humidity 80 1440 < th dose dependent rect. 7 23
101 1179.94 humidity 80 1440 < th dose dependent no NA NA
169 1183.41 humidity 80 1440 < th dose dependent rect. 7 14
310 1193.88 humidity 50 1440 > th dose dependent rect. 5 16
383 1198.41 humidity 70 1440 > th dose independent rect. 8 19
469 1200.46 humidity 70 1440 > th dose independent no NA NA
471 1200.47 humidity 70 1440 > th dose independent rect. 2 23
475 1200.51 humidity 70 1440 > th dose independent rect. 22 23
523 1201.43 humidity 70 1440 < th dose independent rect. 15 16
528 1201.62 humidity 70 1440 < th dose independent rect. 15 5
620 1206.79 humidity 70 1440 > th dose independent rect. 15 12
623 1206.87 humidity 70 1440 > th dose independent rect. 15 10
638 1207.27 humidity 70 1440 > th dose independent rect. 15 16
661 1208.08 humidity 50 1440 > th dose dependent sin 22 NA
708 1211.04 humidity 70 1440 < th dose independent rect. 9 11
830 1216.40 humidity 50 1440 > th dose dependent rect. 15 5
849 1216.76 humidity 70 1440 < th dose independent no NA NA
958 1219.61 radiation 10 1440 > th dose independent rect. 15 18
959 1219.66 humidity 50 1440 > th dose dependent rect. 15 23
980 1220.35 humidity 50 1440 > th dose dependent no NA NA