Os04g0191800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0191800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.03 | 0.305 | 8.2 | 0.902 | 1.16 | -0.581 | 0.183 | 0.551 | 0.135 | 1.56 | 81 | 1351 | -- | -- |
| 42.43 | 0.303 | 8.21 | 0.86 | 1.16 | -0.544 | 0.219 | -- | 0.125 | 1.57 | 82 | 1352 | -- | -- |
| 42.16 | 0.302 | 8.2 | 0.898 | 1.16 | -0.58 | -- | 0.59 | 0.134 | 1.57 | 81 | 1341 | -- | -- |
| 42.61 | 0.304 | 8.21 | 0.842 | 1.16 | -0.54 | -- | -- | 0.13 | 1.58 | 82.01 | 1350 | -- | -- |
| 78.3 | 0.414 | 8.2 | 0.829 | -- | -1.31 | -- | 0.00169 | 0.115 | -- | 85 | 1692 | -- | -- |
| 49.28 | 0.329 | 8.2 | 0.76 | 1.1 | -- | 0.117 | -- | 0.146 | 1.53 | -- | -- | -- | -- |
| 49.34 | 0.329 | 8.2 | 0.756 | 1.1 | -- | -- | -- | 0.145 | 1.54 | -- | -- | -- | -- |
| 74.15 | 0.401 | 8.19 | 0.782 | -- | -1.36 | -- | -- | 0.178 | -- | 134.5 | 5 | -- | -- |
| 60.11 | 0.361 | 8.22 | -- | 1.17 | -0.439 | -- | -- | 0.0919 | 1.61 | 93.88 | 1370 | -- | -- |
| 123.84 | 0.52 | 8.19 | 0.801 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 64.42 | 0.375 | 8.22 | -- | 1.12 | -- | -- | -- | 0.0607 | 1.56 | -- | -- | -- | -- |
| 90.27 | 0.443 | 8.21 | -- | -- | -1.37 | -- | -- | 0.091 | -- | 151.9 | 5 | -- | -- |
| 140.75 | 0.554 | 8.21 | -- | -- | -- | -- | -- | 0.0801 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.96 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 7 | 41.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 11 |
| 8 | 41.01 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 11 | 41.03 | radiation | 10 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 12 | 41.04 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 14 |
| 26 | 41.13 | radiation | 40 | 1440 | < th | dose dependent | rect. | 17 | 4 |
| 42 | 41.24 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 8 |
| 53 | 41.27 | humidity | 70 | 720 | < th | dose independent | rect. | 14 | 6 |
| 67 | 41.34 | humidity | 70 | 720 | < th | dose independent | sin | 15 | NA |
| 71 | 41.35 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 86 | 41.42 | humidity | 70 | 720 | > th | dose independent | sin | 16 | NA |
| 93 | 41.45 | humidity | 80 | 720 | < th | dose dependent | rect. | 12 | 10 |
| 98 | 41.46 | humidity | 80 | 720 | < th | dose dependent | sin | 15 | NA |
| 119 | 41.55 | humidity | 80 | 720 | < th | dose dependent | rect. | 14 | 7 |
| 124 | 41.56 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 2 |
| 141 | 41.57 | humidity | 70 | 720 | > th | dose independent | rect. | 15 | 4 |
| 189 | 41.72 | humidity | 80 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 205 | 41.76 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 215 | 41.79 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 225 | 41.80 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 226 | 41.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 248 | 41.83 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 22 |
| 284 | 41.86 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 288 | 41.86 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 356 | 41.96 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 374 | 41.98 | humidity | 80 | 1440 | < th | dose independent | rect. | 8 | 12 |
| 398 | 42.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 399 | 42.03 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 485 | 42.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 504 | 42.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 548 | 42.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 555 | 42.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 560 | 42.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 601 | 42.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 616 | 42.20 | humidity | 80 | 1440 | < th | dose independent | sin | 0 | NA |
| 637 | 42.21 | humidity | 80 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 709 | 42.25 | radiation | 1 | 720 | < th | dose independent | rect. | 6 | 21 |
| 728 | 42.26 | radiation | 1 | 720 | < th | dose dependent | rect. | 24 | 19 |
| 730 | 42.27 | humidity | 80 | 1440 | > th | dose independent | sin | 0 | NA |
| 736 | 42.27 | radiation | 1 | 720 | < th | dose independent | rect. | 24 | 19 |
| 762 | 42.28 | humidity | 80 | 1440 | < th | dose dependent | no | NA | NA |
| 818 | 42.30 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 858 | 42.32 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 877 | 42.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 926 | 42.34 | humidity | 50 | 1440 | > th | dose dependent | sin | 22 | NA |
| 949 | 42.35 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 1 |