Os04g0191400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0191400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.83 | 0.366 | 13.2 | -0.844 | 0.952 | 3.8 | -0.355 | -0.924 | -0.487 | 7.74 | 16.37 | 583 | -- | -- |
| 61.27 | 0.365 | 13.1 | -0.704 | 0.943 | 3.91 | -0.153 | -- | -0.45 | 7.6 | 15.67 | 564 | -- | -- |
| 61.06 | 0.364 | 13.1 | -0.793 | 0.965 | 3.88 | -- | -0.597 | -0.475 | 7.64 | 16.04 | 565 | -- | -- |
| 61.3 | 0.365 | 13.1 | -0.69 | 0.955 | 3.9 | -- | -- | -0.44 | 7.62 | 15.8 | 564 | -- | -- |
| 69.15 | 0.387 | 13.2 | -0.908 | -- | 3.27 | -- | -0.581 | -0.504 | -- | 15.77 | 1674 | -- | -- |
| 257.52 | 0.752 | 13 | 0.272 | 0.164 | -- | 1.04 | -- | 0.173 | 17.6 | -- | -- | -- | -- |
| 260.09 | 0.755 | 13 | 0.269 | 0.174 | -- | -- | -- | 0.178 | 16.7 | -- | -- | -- | -- |
| 69.63 | 0.389 | 13.2 | -0.828 | -- | 3.4 | -- | -- | -0.451 | -- | 12.06 | 1698 | -- | -- |
| 71.93 | 0.395 | 13.1 | -- | 0.895 | 3.56 | -- | -- | -0.326 | 7.31 | 16.27 | 524 | -- | -- |
| 261.7 | 0.756 | 13 | 0.262 | -- | -- | -- | -- | 0.174 | -- | -- | -- | -- | -- |
| 261.99 | 0.757 | 13 | -- | 0.169 | -- | -- | -- | 0.148 | 16.7 | -- | -- | -- | -- |
| 84.06 | 0.427 | 13.1 | -- | -- | 2.69 | -- | -- | -0.306 | -- | 17.12 | 1673 | -- | -- |
| 263.51 | 0.758 | 13 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 57.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 16 | 60.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 30 | 62.07 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 32 | 62.23 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 35 | 62.29 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 43 | 62.89 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 55 | 63.33 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 60 | 63.40 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 61 | 63.41 | temperature | 15 | 1440 | > th | dose dependent | sin | 14 | NA |
| 81 | 63.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 84 | 63.68 | temperature | 15 | 1440 | > th | dose dependent | rect. | 15 | 14 |
| 85 | 63.68 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 174 | 64.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 220 | 64.60 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 18 |
| 330 | 65.31 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 343 | 65.36 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 690 | 67.06 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 715 | 67.16 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 741 | 67.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 23 |