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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0187800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0146) R2 : 0.00433
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0434 (0.0308) R2dN8 : 0.0056 R2N8 : 0.00433
σ : 0.275
deviance : 34.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.82 0.273 2.85 0.0262 0.165 -0.122 -0.0076 -0.0598 0.015 4.81 90.91 208 -- --
33.74 0.271 2.84 0.0244 0.169 -0.134 -0.0149 -- 0.0128 4.83 91 215 -- --
33.73 0.27 2.85 0.0241 0.171 -0.138 -- -0.0383 0.0113 4.9 91.16 215 -- --
33.73 0.271 2.85 0.0222 0.171 -0.14 -- -- 0.0106 4.91 91.32 215 -- --
34.75 0.275 2.84 0.00979 -- -0.0375 -- -0.0152 0.0356 -- 91.1 282 -- --
34.42 0.275 2.84 0.0032 0.0843 -- -0.126 -- 0.0414 5.23 -- -- -- --
34.46 0.275 2.84 0.00316 0.0836 -- -- -- 0.042 5.29 -- -- -- --
34.73 0.276 2.84 -0.0015 -- 0.0349 -- -- 0.0519 -- 90.22 301 -- --
33.75 0.271 2.85 -- 0.17 -0.137 -- -- 0.00914 4.91 91.27 215 -- --
34.83 0.276 2.84 0.00604 -- -- -- -- 0.0441 -- -- -- -- --
34.46 0.275 2.84 -- 0.0837 -- -- -- 0.0416 5.29 -- -- -- --
34.61 0.274 2.84 -- -- -0.11 -- -- 0.0284 -- 89.18 1266 -- --
34.83 0.275 2.84 -- -- -- -- -- 0.0434 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.16 wind 1.0 30 < th dose independent rect. 2 1
2 32.17 temperature 20.0 10 < th dose independent rect. 11 1
8 32.17 humidity 90.0 90 > th dose independent rect. 10 1
10 32.17 precipitation 0.1 90 > th dose independent rect. 10 1
27 32.17 temperature 20.0 90 < th dose dependent rect. 10 1
28 32.17 temperature 20.0 10 < th dose dependent rect. 11 1
34 32.17 humidity 90.0 90 > th dose dependent rect. 10 1
36 32.17 precipitation 0.1 90 > th dose dependent rect. 10 1
60 32.19 wind 3.0 30 < th dose dependent rect. 2 1
62 32.20 temperature 25.0 30 < th dose independent rect. 2 1
64 32.20 temperature 15.0 30 > th dose dependent rect. 2 1
65 32.20 atmosphere 1005.0 30 > th dose dependent rect. 2 1
67 32.21 temperature 20.0 30 > th dose independent rect. 2 1
68 32.21 humidity 80.0 30 > th dose independent rect. 2 1
73 32.21 atmosphere 995.0 30 > th dose dependent rect. 2 1
78 32.22 temperature 10.0 30 > th dose independent rect. 2 1
81 32.22 humidity 50.0 30 > th dose independent rect. 2 1
84 32.22 atmosphere 995.0 30 > th dose independent rect. 2 1
85 32.22 atmosphere 1010.0 30 < th dose independent rect. 2 1
87 32.22 radiation 1.0 30 < th dose independent rect. 2 1
92 32.22 precipitation 0.1 30 < th dose independent rect. 2 1
93 32.22 temperature 10.0 30 > th dose independent rect. 3 23
94 32.22 humidity 50.0 30 > th dose dependent rect. 2 1
98 32.22 radiation 1.0 30 < th dose dependent rect. 2 1
103 32.22 precipitation 0.1 30 < th dose dependent rect. 2 1
113 32.27 atmosphere 1015.0 30 < th dose dependent rect. 2 1
114 32.29 temperature 30.0 30 < th dose dependent rect. 2 1
115 32.30 wind 9.0 30 < th dose independent rect. 3 23
138 32.48 wind 1.0 30 > th dose independent rect. 2 1
196 32.95 atmosphere 1000.0 10 < th dose independent rect. 23 1
241 33.20 humidity 90.0 90 < th dose independent rect. 2 1
281 33.30 atmosphere 995.0 30 > th dose independent rect. 3 23
284 33.31 temperature 25.0 90 > th dose independent rect. 1 6
295 33.33 wind 1.0 30 < th dose dependent rect. 22 5
300 33.34 wind 1.0 30 < th dose dependent rect. 17 10
304 33.35 wind 7.0 10 > th dose dependent rect. 9 1
318 33.37 atmosphere 1000.0 90 < th dose independent rect. 22 5
319 33.37 radiation 10.0 90 < th dose dependent rect. 9 1
327 33.39 precipitation 0.1 30 < th dose independent rect. 3 23
331 33.39 precipitation 0.1 30 < th dose dependent rect. 3 23
342 33.43 temperature 25.0 1440 > th dose independent rect. 1 1
367 33.46 humidity 90.0 720 > th dose independent rect. 3 3
383 33.49 humidity 80.0 10 > th dose independent rect. 9 3
411 33.53 temperature 15.0 720 < th dose independent rect. 1 1
412 33.53 temperature 25.0 1440 < th dose independent rect. 1 1
419 33.53 temperature 15.0 720 < th dose dependent rect. 1 1
433 33.54 humidity 80.0 4320 < th dose dependent rect. 1 1
438 33.54 temperature 25.0 30 > th dose dependent rect. 2 5
495 33.60 wind 7.0 10 > th dose independent rect. 9 1
540 33.62 humidity 90.0 270 > th dose independent rect. 21 10
552 33.63 humidity 90.0 270 > th dose independent rect. 23 8
623 33.66 temperature 25.0 10 < th dose independent rect. 9 19
653 33.68 humidity 90.0 270 > th dose independent sin 9 NA
656 33.68 radiation 10.0 90 < th dose independent rect. 9 1
683 33.69 wind 3.0 30 > th dose dependent rect. 6 1
690 33.70 wind 1.0 10 > th dose independent sin 17 NA
693 33.70 humidity 80.0 4320 > th dose independent rect. 1 1
694 33.70 humidity 80.0 4320 < th dose independent rect. 1 1
721 33.70 humidity 90.0 270 > th dose dependent rect. 19 11
762 33.71 radiation 10.0 90 < th dose dependent rect. 8 19
770 33.72 humidity 90.0 10 > th dose independent rect. 24 3
786 33.72 temperature 25.0 30 > th dose dependent rect. 6 1
792 33.73 wind 9.0 4320 < th dose independent rect. 3 1
814 33.73 radiation 1.0 43200 < th dose dependent rect. 3 1
836 33.74 temperature 10.0 1440 > th dose independent rect. 3 1
839 33.74 temperature 30.0 1440 < th dose independent rect. 3 1
843 33.74 humidity 50.0 1440 > th dose independent rect. 3 1
852 33.74 atmosphere 995.0 1440 > th dose independent rect. 3 1
853 33.74 radiation 1.0 1440 < th dose independent rect. 3 1
890 33.74 temperature 10.0 1440 > th dose independent rect. 4 23
893 33.74 atmosphere 1015.0 30 < th dose independent rect. 3 23
894 33.74 humidity 90.0 270 > th dose dependent sin 11 NA
895 33.74 radiation 1.0 1440 < th dose dependent rect. 3 1
941 33.75 atmosphere 1010.0 10 < th dose independent rect. 6 1
976 33.75 humidity 50.0 30 > th dose independent rect. 3 23
991 33.75 temperature 25.0 270 > th dose dependent rect. 23 8
998 33.75 radiation 40.0 90 < th dose dependent rect. 9 18