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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0186800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transmembrane protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.54 (0.0503) R2 : 0.528
β1 : 4.04 (0.187) R2dD : 0.527 R2D : 0.308
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.19 (0.203) R2dE : 0.134 R2E : -0.052
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.09 (0.111) R2dN8 : 0.146 R2N8 : -0.0398
σ : 0.931
deviance : 399.98
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.4
memory length : 112
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
385.07 0.922 4.49 4.21 0.642 -2.65 -0.26 0.419 1.21 12 18.92 15 -- --
385.21 0.914 4.5 4.14 0.643 -2.64 -0.113 -- 1.19 12.1 18.9 14 -- --
385.26 0.914 4.5 4.15 0.647 -2.66 -- 0.138 1.2 12.1 18.93 14 -- --
385.28 0.914 4.5 4.13 0.646 -2.65 -- -- 1.19 12.1 18.91 14 -- --
399.98 0.931 4.53 4.05 -- -2.21 -- 0.0762 1.1 -- 18.4 108 -- --
484.59 1.03 4.61 3.55 0.562 -- 0.0807 -- 0.736 5.16 -- -- -- --
484.6 1.03 4.61 3.55 0.563 -- -- -- 0.736 5.19 -- -- -- --
399.98 0.931 4.54 4.04 -- -2.19 -- -- 1.09 -- 18.4 112 -- --
796.03 1.32 4.66 -- 0.405 -1.16 -- -- 0.508 7.7 19.54 6 -- --
501.18 1.05 4.61 3.57 -- -- -- -- 0.75 -- -- -- -- --
816.9 1.34 4.7 -- 0.625 -- -- -- 0.34 4.99 -- -- -- --
798.88 1.32 4.68 -- -- -1.19 -- -- 0.456 -- 24.2 101 -- --
837.47 1.35 4.7 -- -- -- -- -- 0.354 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 375.26 temperature 20 10 > th dose dependent rect. 7 22
2 375.34 temperature 20 90 > th dose dependent rect. 7 21
5 376.81 temperature 10 270 > th dose dependent rect. 5 22
52 385.63 temperature 30 270 < th dose dependent rect. 23 22
58 386.14 temperature 20 10 > th dose dependent no NA NA
85 388.29 temperature 20 270 > th dose dependent rect. 17 22
101 389.46 temperature 20 10 > th dose dependent rect. 23 23
102 389.51 temperature 20 10 > th dose dependent rect. 21 23
115 390.10 temperature 30 30 < th dose dependent rect. 3 23
116 390.17 temperature 10 270 > th dose dependent rect. 17 23
123 390.41 temperature 15 1440 > th dose dependent rect. 23 4
143 391.10 temperature 30 1440 < th dose dependent rect. 23 4
150 391.24 temperature 15 1440 > th dose dependent rect. 1 1
161 391.53 temperature 20 10 > th dose dependent rect. 1 23
169 391.81 temperature 30 1440 < th dose dependent rect. 1 2
172 391.85 temperature 20 10 > th dose dependent rect. 9 15
186 392.14 temperature 30 90 < th dose dependent rect. 11 23
203 392.80 temperature 30 90 < th dose dependent no NA NA
221 393.26 temperature 30 30 < th dose dependent rect. 13 23
230 393.33 temperature 30 30 < th dose dependent rect. 17 23
254 393.81 temperature 30 30 < th dose dependent rect. 15 23
258 393.84 temperature 30 90 < th dose dependent rect. 9 23
276 394.22 temperature 25 1440 < th dose dependent rect. 17 11
295 394.43 temperature 15 720 > th dose dependent rect. 22 20
340 394.88 temperature 30 30 < th dose dependent rect. 19 23
362 395.04 temperature 30 10 < th dose dependent rect. 1 23
393 395.51 temperature 25 1440 < th dose dependent sin 13 NA
442 395.86 wind 9 43200 > th dose dependent rect. 18 13
569 397.08 wind 9 43200 > th dose independent rect. 18 13
614 397.47 temperature 15 1440 > th dose dependent sin 11 NA
820 399.18 temperature 25 270 < th dose independent rect. 23 22
921 399.84 wind 9 43200 < th dose independent rect. 18 13
938 400.00 temperature 25 270 < th dose independent rect. 1 21
988 400.32 wind 9 43200 < th dose independent rect. 18 10