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Os04g0186400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphate transporter 6.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.6 (0.0272) R2 : 0.323
β1 : -0.262 (0.122) R2dD : 0.0136 R2D : -0.121
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.34 (0.174) R2dE : 0.478 R2E : -0.209
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.84 (0.649) R2dD*E : 0.616 R2D*E : -0.277
γ1 : -0.191 (0.0576) R2dN8 : 0.0252 R2N8 : -0.0138
σ : 0.469
deviance : 101.3
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.4587
memory length : 3036
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.51 0.457 12.6 -0.339 0.444 2.25 1.73 8.47 -0.216 2.83 0.631 1438 -- --
115.22 0.5 12.5 0.388 0.415 0.589 1.69 -- -0.00222 2.24 11.66 11364 -- --
100 0.466 12.6 -0.348 0.294 2.22 -- 8.39 -0.224 4 0.5629 1482 -- --
117 0.504 12.4 0.57 0.425 0.834 -- -- 0.071 2.35 4.169 11372 -- --
101.3 0.469 12.6 -0.262 -- 2.34 -- 7.84 -0.191 -- 0.4587 3036 -- --
126.15 0.527 12.5 0.408 0.377 -- 1.55 -- -0.147 2.97 -- -- -- --
134.21 0.543 12.5 0.374 0.382 -- -- -- -0.156 2.77 -- -- -- --
117.92 0.506 12.4 0.714 -- 1.21 -- -- 0.144 -- 3.612 11956 -- --
123.53 0.518 12.5 -- 0.458 0.78 -- -- 0.0253 1.76 6.061 11287 -- --
142.67 0.558 12.5 0.39 -- -- -- -- -0.146 -- -- -- -- --
137.89 0.549 12.5 -- 0.389 -- -- -- -0.198 2.78 -- -- -- --
127.22 0.525 12.4 -- -- 0.948 -- -- 0.114 -- 5.938 12027 -- --
146.68 0.565 12.5 -- -- -- -- -- -0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 93.14 radiation 1.0 1440 < th dose dependent rect. 8 22
2 93.28 wind 7.0 43200 > th dose independent rect. 5 2
5 94.22 temperature 30.0 14400 < th dose independent rect. 15 1
6 94.29 wind 1.0 43200 < th dose dependent rect. 16 3
7 94.42 radiation 10.0 1440 < th dose independent rect. 16 1
8 94.44 wind 9.0 43200 > th dose dependent rect. 19 13
9 94.48 wind 7.0 43200 < th dose independent rect. 6 1
14 94.68 temperature 30.0 14400 > th dose independent rect. 15 1
17 94.88 radiation 40.0 1440 < th dose dependent rect. 16 3
18 94.89 temperature 15.0 43200 < th dose dependent rect. 1 1
22 94.98 radiation 40.0 1440 < th dose dependent rect. 16 7
24 94.98 radiation 1.0 1440 < th dose dependent rect. 17 23
25 94.99 radiation 10.0 1440 < th dose independent rect. 16 3
27 95.00 radiation 40.0 43200 > th dose independent rect. 7 1
34 95.00 radiation 10.0 1440 < th dose independent rect. 16 7
45 95.00 radiation 40.0 43200 > th dose dependent rect. 7 1
48 95.00 radiation 1.0 1440 > th dose dependent rect. 16 3
73 95.02 humidity 90.0 43200 > th dose independent rect. 12 17
78 95.05 radiation 40.0 1440 < th dose dependent rect. 16 10
79 95.05 radiation 40.0 1440 < th dose dependent rect. 16 12
84 95.08 radiation 10.0 1440 < th dose independent rect. 16 10
85 95.08 radiation 10.0 1440 < th dose independent rect. 16 12
105 95.29 radiation 1.0 1440 > th dose dependent rect. 16 1
113 95.36 radiation 40.0 1440 < th dose dependent rect. 16 1
117 95.41 wind 9.0 43200 > th dose independent rect. 18 18
135 95.53 wind 9.0 43200 > th dose independent rect. 19 16
146 95.65 humidity 90.0 43200 < th dose independent rect. 13 16
154 95.70 temperature 25.0 14400 > th dose dependent rect. 17 1
167 95.73 wind 9.0 43200 < th dose independent rect. 18 17
168 95.74 humidity 90.0 43200 > th dose independent rect. 2 6
175 95.74 wind 9.0 43200 > th dose independent rect. 19 14
181 95.75 humidity 90.0 43200 < th dose independent rect. 16 13
217 95.96 humidity 90.0 43200 > th dose independent sin 13 NA
218 95.97 humidity 90.0 43200 > th dose independent rect. 1 8
222 95.98 humidity 90.0 43200 > th dose independent rect. 21 11
228 96.00 temperature 25.0 14400 > th dose independent rect. 10 1
237 96.04 humidity 80.0 43200 > th dose dependent rect. 10 19
244 96.09 temperature 25.0 14400 < th dose independent rect. 10 1
246 96.10 temperature 20.0 43200 < th dose dependent rect. 21 1
247 96.10 humidity 70.0 43200 > th dose dependent rect. 2 16
248 96.11 humidity 90.0 43200 < th dose independent rect. 10 1
265 96.19 humidity 80.0 43200 > th dose dependent rect. 21 21
271 96.23 humidity 80.0 43200 > th dose dependent rect. 24 18
321 96.37 temperature 25.0 14400 < th dose independent rect. 6 5
331 96.41 radiation 1.0 43200 > th dose independent rect. 10 2
333 96.41 humidity 90.0 43200 > th dose independent rect. 21 7
337 96.42 humidity 90.0 43200 < th dose independent rect. 24 11
338 96.42 humidity 70.0 43200 > th dose dependent rect. 3 13
366 96.49 radiation 1.0 43200 < th dose independent rect. 10 2
367 96.49 radiation 1.0 43200 < th dose dependent rect. 10 2
369 96.50 humidity 90.0 43200 > th dose independent rect. 10 1
377 96.53 wind 9.0 43200 < th dose independent rect. 9 6
386 96.54 humidity 90.0 43200 < th dose independent sin 13 NA
388 96.54 temperature 20.0 1440 > th dose dependent rect. 6 1
396 96.56 temperature 25.0 14400 > th dose independent rect. 6 5
428 96.63 humidity 90.0 43200 > th dose independent rect. 21 1
452 96.65 radiation 1.0 1440 < th dose dependent rect. 21 22
462 96.66 radiation 1.0 1440 < th dose dependent rect. 8 18
472 96.67 humidity 80.0 43200 > th dose dependent rect. 16 23
491 96.69 humidity 80.0 43200 > th dose dependent rect. 14 22
509 96.71 radiation 1.0 1440 < th dose dependent rect. 3 23
512 96.72 radiation 1.0 1440 < th dose dependent no NA NA
515 96.72 radiation 1.0 1440 < th dose dependent rect. 8 11
529 96.73 radiation 1.0 1440 < th dose dependent rect. 3 16
533 96.73 radiation 1.0 1440 < th dose dependent rect. 1 23
547 96.75 humidity 80.0 43200 > th dose dependent no NA NA
548 96.75 temperature 25.0 14400 > th dose dependent rect. 12 1
576 96.78 humidity 90.0 43200 > th dose dependent rect. 4 1
588 96.79 temperature 25.0 14400 > th dose dependent rect. 12 7
603 96.81 wind 5.0 43200 > th dose dependent rect. 5 2
609 96.81 radiation 1.0 1440 < th dose dependent rect. 12 23
647 96.86 humidity 90.0 43200 < th dose independent rect. 21 13
664 96.88 humidity 90.0 43200 > th dose dependent sin 15 NA
714 96.94 wind 9.0 43200 < th dose independent rect. 19 20
720 96.95 temperature 20.0 43200 < th dose independent rect. 21 1
751 96.99 temperature 30.0 14400 < th dose independent rect. 14 14
754 96.99 humidity 90.0 43200 > th dose independent rect. 23 20
769 97.00 temperature 30.0 14400 < th dose independent rect. 14 11
774 97.00 humidity 90.0 43200 > th dose independent rect. 21 22
790 97.02 precipitation 0.1 43200 < th dose independent rect. 6 1
792 97.02 humidity 90.0 43200 < th dose independent rect. 24 15
795 97.02 precipitation 0.1 43200 < th dose dependent rect. 6 1
796 97.02 humidity 90.0 43200 > th dose dependent rect. 22 3
819 97.05 humidity 90.0 43200 > th dose independent rect. 21 20
828 97.06 wind 9.0 43200 > th dose independent rect. 9 6
829 97.06 humidity 90.0 43200 > th dose independent rect. 23 18
839 97.07 humidity 90.0 43200 < th dose independent rect. 21 6
868 97.09 humidity 80.0 43200 > th dose dependent rect. 2 23
877 97.11 temperature 20.0 43200 > th dose independent rect. 21 1
900 97.14 temperature 20.0 14400 > th dose dependent rect. 8 1
907 97.15 precipitation 0.1 43200 > th dose independent rect. 6 1
913 97.15 precipitation 0.1 43200 > th dose dependent rect. 6 1
917 97.16 humidity 90.0 43200 < th dose independent rect. 24 19
956 97.20 temperature 25.0 14400 > th dose dependent sin 21 NA
982 97.23 humidity 90.0 43200 > th dose independent rect. 18 1
987 97.23 temperature 30.0 14400 > th dose independent rect. 14 19
989 97.23 wind 7.0 43200 > th dose dependent rect. 9 6