Os04g0185600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphate permease family protein.
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Os04g0185600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphate permease family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 443.16 | 0.989 | 3.67 | 1.98 | 5.13 | -4.73 | -0.777 | 5.84 | 0.162 | 11.3 | 16.68 | 752 | 1.64 | 6.72 |
| 489.83 | 1.03 | 3.76 | 1.35 | 4.72 | -4.39 | 0.213 | -- | -0.041 | 11.3 | 17.13 | 731 | 1.53 | 7.18 |
| 444.86 | 0.982 | 3.66 | 1.91 | 5.11 | -4.71 | -- | 5.5 | 0.163 | 11.2 | 16.82 | 751 | 1.59 | 6.68 |
| 481.42 | 1.02 | 3.75 | 1.05 | 5.11 | -4.44 | -- | -- | -0.0156 | 11.3 | 16.39 | 789 | 1.98 | 5.73 |
| 968.5 | 1.45 | 3.64 | 2.84 | -- | -4.27 | -- | 5.17 | 0.621 | -- | 5.378 | 1467 | 0.566 | 8.44 |
| 839.02 | 1.36 | 4.02 | 0.142 | 2.3 | -- | 0.169 | -- | -0.886 | 11.3 | -- | -- | -- | -- |
| 839.14 | 1.36 | 4.02 | 0.149 | 2.3 | -- | -- | -- | -0.885 | 11.3 | -- | -- | -- | -- |
| 977.59 | 1.46 | 3.94 | 1.16 | -- | -3.25 | -- | -- | -0.215 | -- | 12.19 | 2833 | 4.25 | 6.52 |
| 504.7 | 1.05 | 3.8 | -- | 4.76 | -4 | -- | -- | -0.189 | 11.3 | 16.71 | 786 | 2.3 | 5.32 |
| 1169.19 | 1.6 | 4.07 | 0.0901 | -- | -- | -- | -- | -0.908 | -- | -- | -- | -- | -- |
| 839.72 | 1.36 | 4.02 | -- | 2.29 | -- | -- | -- | -0.902 | 11.3 | -- | -- | -- | -- |
| 977.73 | 1.46 | 3.93 | -- | -- | -2.69 | -- | -- | -0.248 | -- | 9.303 | 1447 | 1.98 | 5.48 |
| 1169.4 | 1.6 | 4.07 | -- | -- | -- | -- | -- | -0.918 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 453.71 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 2 | 459.06 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 5 | 464.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 6 | 464.81 | temperature | 20 | 720 | > th | dose independent | rect. | 2 | 5 |
| 10 | 465.68 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 5 |
| 15 | 467.36 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 161 | 508.01 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 176 | 509.44 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 280 | 525.72 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 293 | 527.12 | temperature | 20 | 720 | > th | dose independent | sin | 6 | NA |
| 345 | 532.91 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 13 |
| 595 | 559.61 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 6 |
| 646 | 564.68 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 825 | 581.86 | humidity | 90 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 851 | 584.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 873 | 585.94 | humidity | 90 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 959 | 593.21 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 980 | 594.80 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 9 |