Os04g0182200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 2OG-Fe(II) oxygenase domain containing protein.
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Os04g0182200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 2OG-Fe(II) oxygenase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 143.76 | 0.563 | 10.5 | 0.635 | 1.57 | 3.05 | -0.965 | 3.43 | 0.883 | 20.5 | 9.198 | 752 | -- | -- |
| 144.4 | 0.56 | 10.5 | 0.556 | 1.55 | 2.64 | -1 | -- | 0.859 | 20.5 | 9.6 | 707 | -- | -- |
| 146.69 | 0.564 | 10.5 | 0.656 | 1.57 | 3.07 | -- | 3.07 | 0.882 | 20.6 | 9.2 | 751 | -- | -- |
| 146.84 | 0.564 | 10.5 | 0.601 | 1.58 | 2.53 | -- | -- | 0.883 | 20.6 | 9.604 | 707 | -- | -- |
| 281.26 | 0.781 | 10.4 | 0.723 | -- | 4.1 | -- | 3.16 | 0.921 | -- | 8.3 | 592 | -- | -- |
| 170.07 | 0.611 | 10.5 | 0.385 | 1.66 | -- | -1.2 | -- | 0.803 | 20.6 | -- | -- | -- | -- |
| 174.64 | 0.619 | 10.5 | 0.421 | 1.66 | -- | -- | -- | 0.802 | 20.7 | -- | -- | -- | -- |
| 219.62 | 0.69 | 10.5 | 1 | -- | 2.73 | -- | -- | 0.793 | -- | 2.371 | 593 | -- | -- |
| 152.27 | 0.575 | 10.5 | -- | 1.57 | 2.43 | -- | -- | 0.803 | 20.6 | 10.4 | 725 | -- | -- |
| 329.86 | 0.849 | 10.5 | 0.417 | -- | -- | -- | -- | 0.788 | -- | -- | -- | -- | -- |
| 179.32 | 0.626 | 10.5 | -- | 1.66 | -- | -- | -- | 0.755 | 20.7 | -- | -- | -- | -- |
| 244.03 | 0.728 | 10.5 | -- | -- | 2.37 | -- | -- | 0.693 | -- | 2.4 | 592 | -- | -- |
| 334.45 | 0.854 | 10.5 | -- | -- | -- | -- | -- | 0.742 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 140.31 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 2 | 140.59 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 9 |
| 3 | 141.06 | wind | 7 | 270 | < th | dose independent | rect. | 2 | 23 |
| 4 | 141.24 | wind | 9 | 720 | > th | dose dependent | rect. | 20 | 21 |
| 11 | 141.54 | wind | 9 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 13 | 141.60 | wind | 9 | 720 | > th | dose dependent | rect. | 12 | 4 |
| 16 | 141.93 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 16 |
| 19 | 141.99 | wind | 9 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 32 | 142.45 | wind | 7 | 270 | > th | dose dependent | rect. | 12 | 22 |
| 34 | 142.58 | wind | 9 | 720 | > th | dose independent | rect. | 19 | 22 |
| 39 | 142.68 | wind | 7 | 270 | > th | dose dependent | rect. | 12 | 17 |
| 50 | 142.85 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 4 |
| 52 | 142.89 | wind | 9 | 720 | < th | dose independent | sin | 22 | NA |
| 57 | 142.94 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 6 |
| 83 | 143.42 | wind | 9 | 720 | > th | dose dependent | sin | 1 | NA |
| 84 | 143.43 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 16 |
| 87 | 143.49 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 2 |
| 153 | 144.19 | wind | 9 | 720 | > th | dose dependent | no | NA | NA |
| 170 | 144.19 | wind | 9 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 217 | 144.27 | wind | 9 | 270 | > th | dose dependent | sin | 10 | NA |
| 245 | 144.37 | wind | 9 | 720 | > th | dose independent | sin | 0 | NA |
| 249 | 144.40 | wind | 9 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 252 | 144.42 | wind | 7 | 270 | < th | dose independent | rect. | 17 | 16 |
| 255 | 144.43 | wind | 9 | 720 | < th | dose independent | no | NA | NA |
| 303 | 144.62 | wind | 9 | 270 | > th | dose independent | sin | 11 | NA |
| 305 | 144.62 | wind | 7 | 270 | < th | dose independent | rect. | 5 | 17 |
| 307 | 144.65 | wind | 9 | 720 | > th | dose independent | rect. | 12 | 1 |
| 308 | 144.67 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 23 |
| 309 | 144.67 | wind | 9 | 720 | > th | dose independent | rect. | 14 | 23 |
| 311 | 144.68 | wind | 9 | 720 | > th | dose independent | no | NA | NA |
| 312 | 144.68 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 17 |
| 327 | 144.68 | wind | 9 | 720 | > th | dose independent | rect. | 1 | 22 |
| 343 | 144.69 | wind | 9 | 720 | > th | dose independent | rect. | 9 | 14 |
| 346 | 144.69 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 15 |
| 385 | 144.70 | wind | 9 | 720 | > th | dose independent | rect. | 11 | 12 |
| 397 | 144.74 | wind | 7 | 270 | > th | dose dependent | sin | 15 | NA |
| 460 | 144.99 | wind | 9 | 720 | < th | dose independent | sin | 19 | NA |
| 577 | 145.43 | wind | 9 | 270 | < th | dose dependent | rect. | 15 | 8 |
| 603 | 145.71 | wind | 9 | 720 | > th | dose dependent | sin | 8 | NA |
| 644 | 146.10 | wind | 9 | 270 | < th | dose dependent | rect. | 5 | 17 |
| 691 | 146.35 | wind | 7 | 270 | < th | dose independent | rect. | 14 | 23 |
| 692 | 146.38 | wind | 9 | 720 | > th | dose independent | sin | 8 | NA |
| 695 | 146.38 | wind | 9 | 270 | < th | dose dependent | rect. | 3 | 21 |
| 704 | 146.44 | wind | 9 | 270 | < th | dose dependent | rect. | 4 | 19 |
| 740 | 146.64 | wind | 7 | 270 | < th | dose independent | rect. | 15 | 20 |
| 860 | 147.11 | wind | 9 | 1440 | < th | dose independent | rect. | 11 | 2 |