FiT-DB / Search/ Help/ Sample detail

Os04g0180900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.024) R2 : 0.649
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.8 (0.0621) R2dC : 0.65 R2C : 0.649
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00935 (0.0505) R2dN8 : 3.41e-05 R2N8 : -0.0013
σ : 0.453
deviance : 93.67
__
_____
C
peak time of C : 16.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
77.37 0.413 10.6 0.629 1.95 0.625 0.386 -0.732 0.106 17.2 80 822 -- --
78.42 0.412 10.6 0.572 1.95 0.627 0.517 -- 0.095 17.2 80.73 831 -- --
77.6 0.41 10.6 0.619 1.96 0.609 -- -0.745 0.107 17.2 81 807 -- --
78.83 0.414 10.6 0.549 1.92 0.601 -- -- 0.101 17.2 82.01 836 -- --
214.27 0.685 10.6 0.417 -- -0.66 -- 0.0447 0.0026 -- 74.08 1234 -- --
85.74 0.434 10.6 0.544 1.81 -- 0.196 -- 0.069 16.6 -- -- -- --
85.84 0.434 10.6 0.545 1.81 -- -- -- 0.0701 16.6 -- -- -- --
214.28 0.685 10.6 0.419 -- -0.66 -- -- 0.0032 -- 74.08 1234 -- --
86.35 0.433 10.6 -- 1.82 0.645 -- -- 0.0574 17.2 82.01 965 -- --
260.58 0.754 10.6 0.475 -- -- -- -- 0.0225 -- -- -- -- --
93.67 0.453 10.6 -- 1.8 -- -- -- 0.00935 16.6 -- -- -- --
218.9 0.691 10.6 -- -- -0.669 -- -- -0.0434 -- 74.08 1234 -- --
266.54 0.762 10.6 -- -- -- -- -- -0.0302 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.34 temperature 20.0 270 > th dose independent rect. 11 15
10 69.00 temperature 20.0 10 > th dose independent rect. 13 15
11 69.09 temperature 20.0 270 > th dose independent rect. 21 9
18 69.66 temperature 10.0 270 > th dose dependent rect. 21 10
22 69.87 wind 7.0 270 < th dose independent rect. 16 18
29 70.20 temperature 20.0 10 > th dose independent rect. 23 9
36 70.39 humidity 70.0 90 > th dose dependent rect. 23 17
50 70.86 humidity 50.0 270 > th dose dependent rect. 22 17
56 70.98 wind 7.0 270 < th dose independent rect. 16 6
70 71.16 atmosphere 1015.0 270 < th dose independent rect. 22 18
78 71.24 atmosphere 995.0 270 > th dose dependent rect. 16 6
85 71.38 humidity 50.0 270 > th dose independent rect. 22 18
87 71.40 precipitation 0.1 270 < th dose independent rect. 16 18
88 71.40 precipitation 0.1 270 < th dose dependent rect. 16 18
90 71.46 humidity 80.0 90 > th dose independent rect. 23 17
100 71.65 atmosphere 995.0 270 > th dose independent rect. 16 6
107 71.71 humidity 50.0 270 > th dose independent rect. 10 6
111 71.76 atmosphere 995.0 270 > th dose independent rect. 16 18
129 71.99 precipitation 0.1 270 < th dose independent rect. 16 6
130 71.99 precipitation 0.1 270 < th dose dependent rect. 16 6
135 72.04 temperature 10.0 270 > th dose independent rect. 16 6
136 72.04 radiation 30.0 270 < th dose independent rect. 16 6
138 72.04 temperature 10.0 270 > th dose independent rect. 22 18
148 72.14 temperature 10.0 270 > th dose independent rect. 10 6
149 72.14 atmosphere 1015.0 270 < th dose independent rect. 10 6
150 72.14 temperature 10.0 270 > th dose independent rect. 16 18
151 72.14 radiation 1.0 270 < th dose independent rect. 21 18
172 72.33 precipitation 0.1 270 < th dose independent rect. 10 6
173 72.33 precipitation 0.1 270 < th dose dependent rect. 10 6
177 72.37 wind 1.0 270 > th dose independent rect. 16 6
180 72.39 wind 1.0 270 > th dose independent rect. 10 6
183 72.40 temperature 15.0 270 > th dose independent rect. 2 9
190 72.49 wind 9.0 270 < th dose independent rect. 22 18
197 72.53 temperature 15.0 270 > th dose independent rect. 7 14
200 72.54 wind 9.0 270 < th dose independent rect. 10 6
203 72.56 precipitation 0.1 270 < th dose independent rect. 2 9
204 72.56 precipitation 0.1 270 < th dose dependent rect. 2 9
222 72.68 radiation 20.0 270 < th dose dependent rect. 21 10
253 72.90 wind 9.0 270 < th dose dependent rect. 16 6
254 72.91 radiation 10.0 270 < th dose independent rect. 21 10
257 72.92 temperature 10.0 10 > th dose dependent rect. 23 9
269 72.96 atmosphere 995.0 270 > th dose independent rect. 22 18
277 72.98 precipitation 0.1 270 < th dose independent rect. 22 18
278 72.98 radiation 40.0 270 < th dose dependent rect. 16 6
280 72.98 precipitation 0.1 270 < th dose dependent rect. 22 18
286 73.02 radiation 1.0 270 < th dose dependent rect. 21 18
291 73.05 atmosphere 995.0 270 > th dose independent rect. 10 6
304 73.12 temperature 20.0 270 > th dose independent sin 15 NA
317 73.17 temperature 20.0 10 > th dose independent rect. 12 20
319 73.17 temperature 10.0 90 > th dose dependent rect. 3 10
362 73.35 wind 7.0 270 < th dose independent rect. 2 9
365 73.36 temperature 10.0 90 > th dose dependent rect. 13 14
370 73.38 temperature 20.0 720 > th dose independent rect. 20 3
419 73.60 humidity 50.0 270 > th dose independent rect. 17 17
465 73.71 atmosphere 995.0 270 > th dose independent rect. 2 9
466 73.71 atmosphere 1015.0 270 < th dose independent rect. 2 9
467 73.71 temperature 10.0 270 > th dose independent rect. 11 15
471 73.73 precipitation 0.1 270 < th dose independent rect. 7 14
472 73.73 precipitation 0.1 270 < th dose dependent rect. 7 14
521 73.86 humidity 60.0 90 > th dose dependent rect. 22 10
559 73.96 temperature 20.0 270 < th dose independent rect. 16 11
567 73.98 atmosphere 1015.0 270 < th dose independent rect. 16 6
571 73.99 humidity 90.0 90 < th dose dependent sin 9 NA
602 74.07 wind 1.0 270 > th dose independent rect. 16 11
606 74.08 temperature 20.0 10 > th dose independent rect. 23 5
617 74.10 humidity 60.0 10 > th dose dependent rect. 22 11
629 74.12 humidity 80.0 90 > th dose independent rect. 23 10
651 74.15 atmosphere 1015.0 1440 < th dose independent rect. 24 9
661 74.17 humidity 50.0 270 > th dose independent rect. 2 9
668 74.18 wind 9.0 270 < th dose independent rect. 11 15
680 74.20 atmosphere 1015.0 90 < th dose independent rect. 13 14
716 74.27 humidity 50.0 270 > th dose independent rect. 17 4
719 74.27 atmosphere 1015.0 270 < th dose independent rect. 11 14
745 74.32 temperature 10.0 10 > th dose dependent rect. 4 9
747 74.33 humidity 50.0 270 > th dose independent rect. 16 6
749 74.33 wind 9.0 270 < th dose independent rect. 7 14
750 74.33 wind 9.0 90 < th dose independent rect. 13 14
794 74.39 temperature 30.0 270 < th dose independent rect. 21 10
795 74.39 humidity 50.0 270 > th dose independent rect. 21 10
797 74.39 atmosphere 995.0 270 > th dose independent rect. 21 10
802 74.39 wind 7.0 10 < th dose independent rect. 18 18
827 74.44 precipitation 0.1 720 < th dose independent rect. 23 15
828 74.44 wind 1.0 270 > th dose independent rect. 16 18
829 74.44 precipitation 0.1 720 < th dose dependent rect. 23 15
860 74.50 humidity 50.0 270 > th dose dependent rect. 10 6
861 74.51 wind 9.0 270 < th dose independent rect. 21 10
894 74.57 humidity 90.0 90 < th dose dependent rect. 19 16
903 74.59 temperature 20.0 10 < th dose independent rect. 18 11
939 74.67 atmosphere 995.0 270 > th dose independent rect. 7 14
941 74.67 humidity 50.0 270 > th dose dependent rect. 11 4
970 74.72 humidity 90.0 30 < th dose independent rect. 18 19
972 74.72 temperature 10.0 10 > th dose dependent rect. 14 14