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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0180300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0341) R2 : 0.00159
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0612 (0.0719) R2dN8 : 0.00205 R2N8 : 0.00159
σ : 0.643
deviance : 189.79
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
182.17 0.634 2.86 0.0268 0.0932 -0.629 -0.298 2.03 0.104 22.8 1.1 82 -- --
184.79 0.633 2.84 0.0827 0.0907 -0.357 -0.309 -- 0.117 22.8 1.3 81 -- --
182.31 0.629 2.86 0.0338 0.0934 -0.634 -- 2.2 0.105 22.5 1.119 74 -- --
184.27 0.632 2.84 0.095 0.107 -0.441 -- -- 0.107 22.3 1.2 145 -- --
182.85 0.63 2.86 0.0358 -- -0.63 -- 2.16 0.104 -- 1.101 74 -- --
186.9 0.641 2.84 0.167 0.157 -- -0.378 -- 0.0757 2.12 -- -- -- --
187.42 0.641 2.84 0.177 0.159 -- -- -- 0.0777 2.56 -- -- -- --
184.86 0.633 2.83 0.101 -- -0.429 -- -- 0.107 -- 1.208 145 -- --
184.5 0.633 2.83 -- 0.105 -0.473 -- -- 0.104 21.9 1.206 145 -- --
188.9 0.642 2.84 0.184 -- -- -- -- 0.0816 -- -- -- -- --
188.24 0.642 2.84 -- 0.163 -- -- -- 0.0579 2.57 -- -- -- --
185.12 0.634 2.84 -- -- -0.452 -- -- 0.0981 -- 1.258 145 -- --
189.79 0.643 2.84 -- -- -- -- -- 0.0612 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 166.82 wind 1.0 90 < th dose dependent rect. 24 1
2 170.35 wind 1.0 90 < th dose independent rect. 24 1
3 175.33 atmosphere 1005.0 30 < th dose dependent rect. 1 1
16 176.53 atmosphere 1000.0 10 < th dose independent rect. 23 1
32 177.78 humidity 90.0 90 > th dose dependent rect. 24 1
48 179.44 wind 1.0 90 > th dose independent rect. 21 23
50 180.05 wind 7.0 1440 < th dose independent rect. 5 1
52 180.05 temperature 10.0 1440 > th dose independent rect. 5 1
55 180.05 temperature 30.0 1440 < th dose independent rect. 5 1
59 180.05 humidity 50.0 1440 > th dose independent rect. 5 1
68 180.05 atmosphere 995.0 1440 > th dose independent rect. 5 1
69 180.05 atmosphere 1015.0 1440 < th dose independent rect. 5 1
70 180.05 radiation 20.0 1440 < th dose independent rect. 5 1
79 180.05 temperature 10.0 1440 > th dose independent rect. 6 23
82 180.14 humidity 90.0 90 > th dose independent rect. 14 1
85 180.14 humidity 90.0 90 > th dose dependent rect. 14 1
89 180.17 radiation 1.0 10 < th dose independent rect. 13 3
101 180.18 radiation 1.0 10 < th dose independent rect. 15 1
127 180.41 temperature 30.0 90 > th dose dependent rect. 10 1
139 180.61 humidity 90.0 90 > th dose independent rect. 24 1
155 180.92 radiation 1.0 720 < th dose dependent rect. 15 1
156 180.93 radiation 1.0 10 < th dose dependent rect. 15 1
173 181.02 temperature 25.0 90 < th dose dependent rect. 14 3
185 181.04 wind 1.0 90 < th dose independent rect. 24 5
194 181.10 atmosphere 1000.0 30 > th dose independent rect. 21 23
195 181.10 temperature 25.0 270 < th dose dependent rect. 14 1
203 181.21 atmosphere 1005.0 90 > th dose dependent rect. 20 1
207 181.24 humidity 90.0 270 > th dose dependent rect. 22 4
215 181.31 temperature 25.0 30 > th dose dependent rect. 20 3
217 181.33 radiation 1.0 4320 < th dose dependent rect. 21 1
233 181.40 wind 1.0 90 < th dose independent sin 14 NA
242 181.45 radiation 1.0 720 < th dose independent rect. 14 2
249 181.49 wind 9.0 30 < th dose independent rect. 21 23
258 181.52 atmosphere 1005.0 10 > th dose dependent rect. 20 2
274 181.59 temperature 10.0 1440 > th dose independent rect. 21 1
277 181.59 temperature 30.0 1440 < th dose independent rect. 21 1
281 181.59 humidity 50.0 1440 > th dose independent rect. 21 1
287 181.59 atmosphere 1005.0 30 > th dose independent rect. 20 1
288 181.59 atmosphere 995.0 1440 > th dose independent rect. 21 1
289 181.59 radiation 1.0 1440 < th dose independent rect. 21 1
311 181.59 temperature 10.0 1440 > th dose independent rect. 22 23
320 181.60 radiation 10.0 90 < th dose dependent rect. 14 1
322 181.61 wind 3.0 30 > th dose independent rect. 20 1
323 181.61 humidity 80.0 30 > th dose independent rect. 20 1
327 181.62 wind 5.0 30 < th dose independent rect. 20 1
330 181.62 temperature 10.0 30 > th dose independent rect. 20 1
333 181.62 temperature 30.0 30 < th dose independent rect. 20 1
334 181.62 humidity 50.0 30 > th dose independent rect. 20 1
337 181.62 humidity 90.0 30 < th dose independent rect. 20 1
338 181.62 atmosphere 995.0 30 > th dose independent rect. 20 1
340 181.62 atmosphere 1010.0 30 < th dose independent rect. 20 1
342 181.62 radiation 1.0 30 < th dose independent rect. 20 1
347 181.62 precipitation 0.1 30 < th dose independent rect. 20 1
349 181.62 temperature 10.0 30 > th dose independent rect. 21 23
350 181.62 wind 1.0 30 > th dose dependent rect. 20 1
351 181.62 temperature 10.0 30 > th dose dependent rect. 20 1
353 181.62 humidity 50.0 30 > th dose dependent rect. 20 1
356 181.62 radiation 1.0 30 < th dose dependent rect. 20 1
361 181.62 precipitation 0.1 30 < th dose dependent rect. 20 1
365 181.63 wind 7.0 30 < th dose dependent rect. 20 1
377 181.66 temperature 30.0 30 < th dose dependent rect. 20 1
379 181.66 atmosphere 1015.0 30 < th dose dependent rect. 20 1
380 181.67 humidity 90.0 30 < th dose dependent rect. 20 1
390 181.71 temperature 25.0 270 < th dose independent rect. 14 1
391 181.71 precipitation 0.1 30 < th dose independent rect. 21 23
392 181.71 precipitation 0.1 30 < th dose dependent rect. 21 23
446 181.85 wind 1.0 270 < th dose dependent rect. 20 2
448 181.87 wind 1.0 90 > th dose independent sin 13 NA
483 182.01 radiation 1.0 30 > th dose dependent rect. 5 1
497 182.02 atmosphere 1005.0 10 > th dose independent rect. 5 1
548 182.17 temperature 20.0 90 > th dose independent rect. 1 1
550 182.17 wind 1.0 90 < th dose independent rect. 11 18
561 182.20 wind 1.0 270 < th dose independent rect. 20 2
568 182.22 wind 1.0 90 < th dose independent rect. 4 22
578 182.25 wind 1.0 90 < th dose independent rect. 24 13
599 182.30 wind 1.0 90 < th dose independent rect. 24 18
611 182.32 precipitation 0.1 1440 < th dose independent rect. 21 1
613 182.32 precipitation 0.1 1440 < th dose dependent rect. 21 1
692 182.53 radiation 10.0 270 < th dose dependent rect. 12 4
695 182.55 radiation 1.0 30 < th dose dependent rect. 21 23
704 182.59 humidity 50.0 30 > th dose independent rect. 21 23
706 182.60 radiation 1.0 1440 > th dose independent rect. 13 3
708 182.60 radiation 1.0 1440 < th dose independent rect. 11 5
719 182.62 radiation 1.0 1440 > th dose independent rect. 11 5
758 182.70 humidity 90.0 10 > th dose dependent rect. 5 22
788 182.77 temperature 30.0 90 > th dose independent rect. 10 1
829 182.84 radiation 40.0 10 < th dose independent rect. 6 23
864 182.93 radiation 1.0 1440 < th dose independent rect. 11 1
870 182.93 radiation 1.0 1440 < th dose dependent rect. 11 1
894 182.98 radiation 1.0 10 > th dose independent rect. 5 1
908 182.98 wind 1.0 90 < th dose dependent sin 15 NA
943 183.02 wind 1.0 720 > th dose independent rect. 9 7
972 183.05 temperature 25.0 10 < th dose independent rect. 15 1
986 183.06 wind 1.0 90 > th dose independent no NA NA