Os04g0179700 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0179700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Syn-pimara-7,15-diene synthase.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.44	(0.0654)	R²	:	0.451
β₁	:	2.13	(0.239)	R²_dD	:	0.1	R²_D	:	0.0365
β₂	:	2	(0.159)	R²_dC	:	0.19	R²_C	:	0.161
β₃	:	-1.83	(0.177)	R²_dE	:	0.135	R²_E	:	0.0488
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	1.29	(0.141)	R²_dN8	:	0.139	R²_N8	:	0.0327
σ	:	1.22
deviance	:	684.41
__

_____

C
peak time of C	:	2.41
E
wheather	:	atmosphere
threshold	:	1005
memory length	:	281
response mode	:	> th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	2.32
open length of G	:	6.72

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
674.15	1.22	5.43	2.24	2.05	-1.83	1.38	1.49	1.33	2.47	1005	274	2.15	6.9
679.02	1.21	5.44	2.2	2	-1.85	1.39	--	1.31	2.42	1005	283	2.29	6.73
680.54	1.21	5.44	2.18	2.06	-1.82	--	1.45	1.32	2.35	1005	280	2.23	6.63
684.41	1.22	5.44	2.13	2	-1.83	--	--	1.29	2.41	1005	281	2.32	6.72
774.6	1.3	5.46	2.19	--	-1.93	--	0.954	1.27	--	1002	719	2.87	6.8
756.33	1.29	5.53	2.08	2.23	--	0.539	--	1.05	0.12	--	--	--	--
757.57	1.29	5.53	2.05	2.23	--	--	--	1.04	0.0917	--	--	--	--
757.49	1.28	5.46	1.94	--	-2.03	--	--	1.17	--	1003	738	3.01	6.01
805.2	1.32	5.48	--	2.04	-1.72	--	--	1.07	2.24	1005	262	2.65	6.52
1070.52	1.53	5.49	2.13	--	--	--	--	1.08	--	--	--	--	--
868.83	1.38	5.58	--	2.26	--	--	--	0.815	0.142	--	--	--	--
857.84	1.36	5.49	--	--	-1.94	--	--	0.831	--	997.8	758	3.02	6.42
1189.67	1.61	5.54	--	--	--	--	--	0.84	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	680.16	atmosphere	1005	270	> th	dose independent	rect.	2	7
4	685.81	atmosphere	1000	14400	> th	dose independent	rect.	21	1
5	685.87	atmosphere	1000	270	> th	dose dependent	rect.	2	7
6	685.92	atmosphere	1000	14400	< th	dose independent	rect.	21	1
11	686.05	atmosphere	1000	14400	> th	dose independent	rect.	23	1
12	686.11	atmosphere	1000	14400	< th	dose independent	rect.	23	1
42	689.23	atmosphere	1000	14400	> th	dose independent	rect.	16	8
46	689.34	atmosphere	1005	14400	> th	dose independent	rect.	5	1
58	689.76	atmosphere	1000	14400	< th	dose independent	rect.	17	7
78	690.17	atmosphere	1015	14400	< th	dose dependent	rect.	23	1
90	690.31	atmosphere	995	14400	> th	dose dependent	rect.	23	1
125	690.76	atmosphere	1015	14400	< th	dose dependent	rect.	22	8
134	690.82	atmosphere	995	14400	> th	dose dependent	rect.	22	8
195	691.15	atmosphere	1005	14400	< th	dose dependent	rect.	22	1
198	691.16	atmosphere	1005	14400	< th	dose independent	rect.	5	1
226	691.31	atmosphere	1015	14400	< th	dose dependent	rect.	5	1
243	691.42	temperature	20	270	> th	dose independent	rect.	4	3
258	691.48	atmosphere	1000	14400	< th	dose independent	rect.	17	1
269	691.52	atmosphere	1015	14400	< th	dose dependent	sin	10	NA
280	691.55	atmosphere	1000	14400	> th	dose independent	rect.	15	3
281	691.55	atmosphere	995	14400	> th	dose dependent	rect.	5	1
292	691.58	atmosphere	995	14400	> th	dose dependent	rect.	3	3
314	691.66	temperature	20	270	> th	dose independent	rect.	3	5
318	691.67	atmosphere	995	14400	> th	dose dependent	sin	10	NA
328	691.70	atmosphere	1000	14400	> th	dose independent	sin	15	NA
535	692.21	atmosphere	1000	14400	< th	dose independent	sin	15	NA
671	692.45	atmosphere	1015	14400	< th	dose dependent	no	NA	NA
684	692.46	atmosphere	1015	14400	< th	dose dependent	rect.	7	23
698	692.48	atmosphere	1015	14400	< th	dose dependent	rect.	3	23
699	692.48	atmosphere	1015	14400	< th	dose dependent	rect.	9	23
753	692.55	atmosphere	1015	14400	< th	dose dependent	rect.	7	1
833	692.66	atmosphere	995	14400	> th	dose dependent	no	NA	NA
840	692.66	atmosphere	995	14400	> th	dose dependent	rect.	7	23
846	692.67	atmosphere	995	14400	> th	dose dependent	rect.	9	23
850	692.68	atmosphere	1015	14400	< th	dose dependent	rect.	7	4
876	692.70	atmosphere	995	14400	> th	dose dependent	rect.	3	23
878	692.71	atmosphere	1015	14400	< th	dose dependent	rect.	9	1