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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0179200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Stem secoisolariciresinol dehydrogenase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.51 (0.0582) R2 : 0.322
β1 : 2.32 (0.222) R2dD : 0.165 R2D : -0.00125
β2 : 1.01 (0.138) R2dC : 0.0765 R2C : 0.0339
β3 : -2.13 (0.219) R2dE : 0.173 R2E : 0.00102
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1 (0.126) R2dN8 : 0.133 R2N8 : 0.0111
σ : 1.08
deviance : 539.45
__
_____
C
peak time of C : 23.1
E
wheather : temperature
threshold : 17.88
memory length : 1412
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 0.85

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
536.86 1.09 5.49 2.47 0.986 -2.18 0.356 1.06 1.05 23.3 18.3 1412 16.1 0.945
539.11 1.08 5.51 2.35 1.02 -2.1 0.467 -- 1.04 23.1 18.06 1412 16.1 0.883
537.34 1.08 5.49 2.47 0.986 -2.18 -- 1.13 1.05 23.2 18.3 1410 16.1 0.913
539.45 1.08 5.51 2.32 1.01 -2.13 -- -- 1 23.1 17.88 1412 16.1 0.85
597.32 1.14 5.46 2.48 -- -2.1 -- 1.27 1.06 -- 18.18 1414 16.1 0.884
655.26 1.2 5.58 1.54 0.916 -- 0.0083 -- 0.725 22.5 -- -- -- --
655.26 1.2 5.58 1.54 0.916 -- -- -- 0.725 22.4 -- -- -- --
599.35 1.14 5.5 2.23 -- -2.08 -- -- 1.01 -- 18.03 1414 16.1 0.883
656.63 1.19 5.51 -- 1.14 -1.38 -- -- 0.847 23.2 20.89 1406 16.3 0.317
706.69 1.24 5.56 1.55 -- -- -- -- 0.729 -- -- -- -- --
717.41 1.25 5.62 -- 0.926 -- -- -- 0.554 22.6 -- -- -- --
711.98 1.24 5.52 -- -- -1.23 -- -- 0.727 -- 21.12 1392 16.5 0.367
770.16 1.3 5.6 -- -- -- -- -- 0.557 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 515.14 radiation 30 14400 < th dose independent rect. 16 1
2 515.15 radiation 30 14400 < th dose independent rect. 16 14
7 517.24 radiation 30 14400 < th dose independent rect. 16 6
11 517.95 radiation 30 14400 < th dose independent rect. 16 8
17 531.36 radiation 10 14400 > th dose dependent rect. 17 13
20 531.93 radiation 30 14400 > th dose dependent rect. 16 16
35 535.13 radiation 10 14400 > th dose dependent rect. 17 1
47 535.26 radiation 10 14400 < th dose independent rect. 17 12
48 535.43 radiation 10 14400 < th dose independent rect. 17 2
51 535.55 radiation 10 14400 < th dose independent rect. 17 5
52 535.59 radiation 10 14400 < th dose independent rect. 17 7
58 536.95 wind 5 43200 > th dose independent rect. 23 17
62 537.17 wind 5 43200 < th dose independent rect. 23 17
68 538.07 radiation 30 14400 > th dose dependent rect. 7 1
83 538.10 radiation 10 14400 > th dose independent rect. 5 1
96 538.33 radiation 30 14400 > th dose independent rect. 16 16
103 538.79 radiation 30 14400 < th dose independent rect. 7 1
121 539.80 radiation 30 14400 < th dose independent rect. 23 9
122 539.80 radiation 30 14400 < th dose independent rect. 21 11
123 539.85 wind 7 43200 > th dose independent sin 10 NA
124 539.86 radiation 30 14400 < th dose independent rect. 2 6
128 539.90 wind 5 43200 > th dose independent sin 3 NA
131 539.96 wind 5 43200 < th dose independent sin 3 NA
147 540.53 wind 7 43200 > th dose dependent rect. 18 13
148 540.57 wind 7 43200 < th dose independent sin 10 NA
158 540.86 wind 7 43200 > th dose independent rect. 18 17
170 541.27 radiation 30 14400 > th dose independent rect. 7 1
187 541.40 wind 5 43200 > th dose dependent sin 5 NA
188 541.45 wind 7 43200 < th dose independent rect. 18 17
208 541.91 wind 5 43200 > th dose dependent rect. 22 18
220 542.21 wind 3 43200 > th dose dependent rect. 24 16
228 542.32 wind 5 43200 > th dose dependent sin 11 NA
229 542.33 radiation 10 1440 < th dose independent rect. 17 12
233 542.41 wind 5 43200 > th dose dependent rect. 18 20
244 542.60 radiation 40 14400 < th dose independent rect. 15 18
253 542.80 wind 7 43200 > th dose independent rect. 19 13
266 542.97 wind 5 43200 > th dose dependent rect. 15 22
267 542.98 wind 9 43200 > th dose independent rect. 19 11
288 543.16 wind 5 43200 > th dose independent rect. 15 23
291 543.18 wind 5 43200 < th dose independent rect. 15 23
330 543.65 wind 9 43200 < th dose independent rect. 19 11
353 543.96 radiation 10 1440 < th dose independent rect. 17 2
359 544.10 wind 5 43200 > th dose independent no NA NA
362 544.13 wind 5 43200 > th dose independent rect. 13 23
367 544.15 wind 5 43200 > th dose independent rect. 24 23
375 544.27 wind 5 43200 > th dose dependent rect. 18 16
398 544.49 wind 5 43200 < th dose independent no NA NA
401 544.50 wind 5 43200 > th dose independent rect. 10 23
406 544.52 wind 5 43200 < th dose independent rect. 13 23
407 544.52 wind 5 43200 < th dose independent rect. 24 23
409 544.54 wind 5 43200 > th dose independent rect. 6 23
417 544.63 radiation 10 1440 < th dose independent rect. 17 5
429 544.69 wind 5 43200 > th dose independent rect. 6 1
430 544.69 humidity 90 43200 < th dose independent rect. 4 5
431 544.69 wind 7 43200 > th dose independent rect. 24 11
468 544.96 wind 5 43200 < th dose independent rect. 10 23
469 544.97 wind 7 43200 < th dose independent rect. 24 11
476 545.03 wind 5 43200 < th dose independent rect. 6 23
478 545.06 radiation 10 1440 < th dose independent rect. 17 7
496 545.22 temperature 20 1440 > th dose dependent rect. 16 1
518 545.33 wind 5 43200 > th dose independent rect. 4 23
530 545.39 wind 5 43200 > th dose dependent rect. 6 1
562 545.69 wind 5 43200 > th dose dependent rect. 12 23
571 545.80 wind 5 43200 < th dose independent rect. 4 23
618 546.01 humidity 90 43200 < th dose independent rect. 3 11
627 546.06 wind 7 43200 > th dose independent rect. 22 13
635 546.12 wind 5 43200 > th dose dependent no NA NA
657 546.28 wind 5 43200 > th dose dependent rect. 6 23
670 546.37 wind 5 43200 > th dose dependent rect. 24 23
714 546.74 wind 5 43200 < th dose independent rect. 6 1
811 547.41 wind 5 43200 > th dose dependent rect. 6 8
841 547.62 wind 7 43200 > th dose independent rect. 9 1
860 547.71 wind 7 43200 > th dose independent rect. 1 1
871 547.79 wind 5 43200 < th dose independent rect. 4 3
874 547.80 wind 7 43200 < th dose independent rect. 9 1
889 547.88 temperature 20 1440 > th dose dependent rect. 13 5
908 547.99 wind 7 43200 < th dose independent rect. 1 1
930 548.15 wind 7 43200 > th dose dependent rect. 24 4
992 548.53 wind 7 43200 > th dose independent rect. 24 4