FiT-DB / Search/ Help/ Sample detail

Os04g0179100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Stem secoisolariciresinol dehydrogenase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.57 (0.0358) R2 : 0.419
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.635 (0.0924) R2dC : 0.0613 R2C : 0.0131
β3 : -2.84 (0.198) R2dE : 0.284 R2E : 0.3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.468 (0.0769) R2dN8 : 0.0647 R2N8 : 0.107
σ : 0.666
deviance : 204.56
__
_____
C
peak time of C : 19.4
E
wheather : radiation
threshold : 1.106
memory length : 1494
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
200.9 0.666 9.52 -0.0202 0.637 -3.13 -0.831 -2.31 0.482 16.9 0.9894 1438 -- --
203.76 0.665 9.55 -0.251 0.601 -2.63 -0.907 -- 0.459 16.8 1.116 1438 -- --
196.25 0.652 9.4 0.338 0.663 -4.49 -- -7.67 0.633 17 0.24 1442 -- --
202.96 0.664 9.57 -0.251 0.638 -2.94 -- -- 0.434 19.4 1.179 1492 -- --
217.08 0.686 9.41 0.287 -- -4.5 -- -7.5 0.572 -- 0.23 1447 -- --
283.41 0.789 9.48 0.38 0.601 -- -1.12 -- 0.796 16.7 -- -- -- --
286.38 0.792 9.48 0.372 0.603 -- -- -- 0.79 17.1 -- -- -- --
223.66 0.697 9.54 -0.237 -- -2.77 -- -- 0.44 -- 1.135 1477 -- --
204.56 0.666 9.57 -- 0.635 -2.84 -- -- 0.468 19.4 1.106 1494 -- --
305.45 0.817 9.47 0.351 -- -- -- -- 0.775 -- -- -- -- --
290.03 0.797 9.49 -- 0.597 -- -- -- 0.749 17.1 -- -- -- --
225.2 0.699 9.53 -- -- -2.66 -- -- 0.484 -- 1.14 1477 -- --
308.7 0.82 9.48 -- -- -- -- -- 0.736 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 190.06 wind 7 43200 > th dose dependent rect. 15 2
4 193.56 wind 7 43200 > th dose dependent rect. 14 4
5 193.96 wind 9 43200 < th dose independent rect. 16 1
6 194.01 radiation 1 1440 < th dose dependent rect. 8 22
8 194.15 wind 7 43200 > th dose independent rect. 16 1
9 194.46 radiation 1 1440 < th dose dependent rect. 11 19
15 195.15 radiation 1 1440 < th dose dependent rect. 18 22
16 195.22 humidity 80 14400 > th dose independent rect. 21 2
17 195.27 radiation 1 43200 < th dose dependent rect. 17 12
20 195.64 radiation 1 43200 < th dose dependent rect. 18 8
23 195.66 radiation 1 43200 < th dose dependent rect. 17 2
25 195.66 radiation 1 43200 < th dose dependent rect. 17 5
52 196.24 radiation 1 4320 < th dose dependent rect. 12 6
57 196.74 radiation 1 43200 < th dose dependent rect. 17 16
82 197.00 wind 9 43200 > th dose independent rect. 10 9
86 197.07 radiation 1 43200 < th dose dependent sin 12 NA
103 197.38 radiation 1 4320 > th dose independent rect. 12 6
112 197.57 radiation 1 43200 < th dose dependent rect. 4 2
117 197.61 wind 7 43200 > th dose independent rect. 13 5
119 197.63 radiation 1 43200 < th dose dependent rect. 21 9
146 197.88 radiation 1 43200 < th dose independent rect. 18 2
147 197.88 temperature 20 14400 < th dose dependent rect. 5 1
148 197.88 humidity 90 43200 > th dose dependent rect. 23 1
151 197.89 radiation 1 4320 < th dose dependent rect. 12 14
154 197.91 radiation 1 43200 < th dose independent rect. 18 4
159 197.93 wind 9 43200 < th dose independent rect. 10 9
163 197.94 radiation 1 4320 < th dose dependent rect. 12 12
164 197.95 radiation 1 43200 < th dose independent rect. 18 8
180 198.01 humidity 90 43200 > th dose dependent rect. 21 5
185 198.06 humidity 60 43200 < th dose dependent rect. 9 3
186 198.06 radiation 1 43200 < th dose dependent rect. 7 23
187 198.09 radiation 1 1440 < th dose dependent rect. 1 15
194 198.13 wind 9 43200 > th dose independent rect. 11 18
195 198.13 radiation 1 1440 < th dose dependent rect. 4 12
204 198.19 radiation 1 1440 < th dose dependent rect. 23 17
205 198.19 radiation 1 1440 < th dose dependent rect. 21 19
227 198.27 wind 9 43200 > th dose independent rect. 11 16
277 198.52 radiation 1 43200 < th dose dependent rect. 4 15
302 198.52 radiation 1 43200 < th dose dependent rect. 21 23
304 198.53 radiation 1 43200 < th dose dependent no NA NA
328 198.57 radiation 1 4320 < th dose dependent rect. 9 17
331 198.59 radiation 1 43200 < th dose dependent rect. 4 6
348 198.63 radiation 1 43200 < th dose dependent rect. 21 13
369 198.66 radiation 1 4320 < th dose dependent rect. 9 11
382 198.68 radiation 1 43200 < th dose dependent rect. 7 12
384 198.68 radiation 1 43200 < th dose dependent rect. 7 15
392 198.69 radiation 1 43200 < th dose dependent rect. 7 19
395 198.70 humidity 90 43200 > th dose independent rect. 20 4
429 198.81 temperature 20 14400 < th dose dependent rect. 2 4
438 198.86 humidity 80 43200 < th dose independent rect. 16 1
448 198.90 radiation 1 4320 < th dose independent rect. 12 6
495 199.11 wind 9 43200 > th dose independent rect. 11 13
513 199.15 radiation 1 43200 > th dose dependent rect. 17 13
533 199.20 radiation 1 1440 > th dose independent rect. 11 19
543 199.29 radiation 1 43200 > th dose independent rect. 17 2
568 199.33 radiation 1 1440 > th dose independent rect. 9 21
572 199.33 wind 7 43200 > th dose dependent rect. 11 11
595 199.39 temperature 20 14400 < th dose dependent rect. 2 1
613 199.46 wind 9 43200 < th dose independent rect. 14 5
626 199.55 radiation 1 4320 < th dose dependent sin 19 NA
634 199.59 radiation 10 43200 < th dose independent rect. 15 14
635 199.60 humidity 80 43200 < th dose independent rect. 15 3
646 199.69 radiation 10 43200 < th dose independent rect. 15 4
647 199.69 radiation 10 43200 < th dose independent rect. 15 10
673 199.76 wind 9 43200 < th dose independent rect. 11 16
701 199.91 humidity 60 43200 < th dose dependent rect. 23 13
704 199.92 humidity 60 43200 < th dose dependent rect. 1 11
708 199.93 humidity 60 43200 < th dose dependent rect. 3 9
741 200.01 humidity 90 43200 > th dose dependent rect. 5 1
763 200.08 humidity 70 43200 < th dose independent rect. 3 6
787 200.14 radiation 1 1440 < th dose dependent sin 1 NA
824 200.26 radiation 1 14400 > th dose independent rect. 9 1
836 200.34 humidity 90 43200 > th dose dependent rect. 1 1
838 200.36 radiation 1 1440 < th dose independent rect. 11 19
839 200.37 humidity 90 43200 < th dose independent rect. 19 6
840 200.37 humidity 90 43200 > th dose dependent rect. 20 11
844 200.41 humidity 80 43200 > th dose independent rect. 17 1
860 200.49 humidity 70 43200 < th dose independent rect. 7 2
900 200.74 radiation 1 43200 < th dose independent rect. 7 12
902 200.74 radiation 1 43200 < th dose independent rect. 7 15
907 200.75 radiation 1 43200 < th dose independent rect. 7 19
917 200.78 humidity 80 43200 < th dose independent rect. 12 7
926 200.83 radiation 1 1440 < th dose dependent rect. 5 15
936 200.85 radiation 1 1440 < th dose dependent rect. 11 23
943 200.87 radiation 1 1440 < th dose dependent rect. 1 19
956 200.89 radiation 1 1440 < th dose dependent rect. 5 19
957 200.89 radiation 1 1440 < th dose dependent rect. 5 21
958 200.89 radiation 1 1440 < th dose dependent rect. 23 21
959 200.90 humidity 90 43200 < th dose independent rect. 22 2
965 200.90 radiation 1 1440 < th dose dependent rect. 21 23
986 200.93 radiation 1 1440 < th dose dependent rect. 1 23