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Os04g0178300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Copalyl diphosphate synthetase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.98 (0.0537) R2 : 0.436
β1 : 2.18 (0.198) R2dD : 0.158 R2D : 0.0698
β2 : 1.2 (0.131) R2dC : 0.105 R2C : 0.127
β3 : -2.07 (0.211) R2dE : 0.126 R2E : 0.127
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.76 (0.116) R2dN8 : 0.0732 R2N8 : 0.0546
σ : 1
deviance : 462.54
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C
peak time of C : 1.89
E
wheather : temperature
threshold : 30.49
memory length : 571
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
458.21 1.01 6.87 3.18 1.3 -3.06 -0.377 10.6 0.75 1.94 30.3 683 -- --
461.52 1 6.98 2.19 1.2 -2.07 -0.49 -- 0.76 1.89 30.48 571 -- --
458.74 0.998 6.87 3.18 1.31 -3.03 -- 10.5 0.752 1.98 30.31 682 -- --
462.54 1 6.98 2.18 1.2 -2.07 -- -- 0.76 1.89 30.49 571 -- --
522.22 1.06 6.82 3.28 -- -3.34 -- 10.9 0.982 -- 29.8 377 -- --
542.27 1.09 6.92 1.93 1.51 -- 0.358 -- 0.929 3.39 -- -- -- --
542.64 1.09 6.92 1.92 1.51 -- -- -- 0.927 3.34 -- -- -- --
526.21 1.07 6.92 2.31 -- -2.02 -- -- 1.03 -- 29.5 369 -- --
584.64 1.13 7.02 -- 1.28 -1.7 -- -- 0.549 2.26 30.64 566 -- --
670.51 1.21 6.92 1.99 -- -- -- -- 0.966 -- -- -- -- --
640.28 1.18 6.97 -- 1.54 -- -- -- 0.712 3.34 -- -- -- --
659.13 1.2 6.95 -- -- -1.59 -- -- 0.875 -- 28.7 353 -- --
774.82 1.3 6.97 -- -- -- -- -- 0.746 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 442.99 temperature 20 270 > th dose dependent rect. 13 21
9 449.53 temperature 20 30 > th dose dependent rect. 24 20
16 452.51 radiation 1 4320 > th dose dependent rect. 18 1
29 453.70 temperature 20 270 > th dose dependent rect. 21 22
31 453.83 temperature 10 270 > th dose dependent rect. 21 22
33 454.14 temperature 30 720 < th dose independent rect. 9 21
34 454.25 wind 7 43200 < th dose dependent rect. 9 6
37 454.57 wind 1 43200 > th dose dependent rect. 7 9
38 454.64 wind 7 43200 < th dose dependent rect. 7 9
61 455.22 atmosphere 995 43200 < th dose dependent rect. 15 1
63 455.26 temperature 30 720 < th dose independent rect. 1 22
71 455.43 temperature 30 720 < th dose independent rect. 3 18
72 455.50 atmosphere 995 43200 > th dose independent rect. 15 1
73 455.51 radiation 30 14400 < th dose independent rect. 16 1
77 455.55 radiation 10 4320 < th dose independent rect. 17 2
78 455.55 wind 3 43200 > th dose dependent rect. 23 21
79 455.57 atmosphere 995 43200 < th dose independent rect. 15 1
81 455.63 radiation 10 4320 < th dose independent rect. 17 7
82 455.63 wind 5 43200 < th dose independent rect. 13 19
87 455.72 radiation 10 4320 < th dose independent rect. 17 5
102 455.97 wind 3 43200 > th dose independent rect. 10 4
135 456.40 wind 3 43200 > th dose dependent rect. 12 21
140 456.46 wind 5 43200 < th dose independent rect. 23 21
145 456.50 temperature 20 90 > th dose dependent rect. 16 17
153 456.58 wind 5 43200 > th dose independent rect. 13 19
158 456.61 wind 5 43200 < th dose independent rect. 2 17
189 456.90 wind 1 43200 > th dose dependent sin 0 NA
192 456.92 radiation 30 14400 > th dose dependent rect. 16 16
227 457.30 atmosphere 995 43200 > th dose independent rect. 13 7
229 457.31 radiation 30 14400 < th dose independent rect. 16 8
249 457.41 radiation 30 14400 < th dose independent rect. 16 6
254 457.44 wind 9 43200 < th dose dependent sin 0 NA
259 457.49 radiation 30 14400 < th dose independent rect. 16 14
262 457.53 atmosphere 995 43200 < th dose independent rect. 13 6
268 457.55 wind 3 43200 < th dose dependent rect. 9 2
290 457.76 wind 5 43200 > th dose independent rect. 23 20
296 457.79 wind 5 43200 > th dose independent rect. 2 17
316 457.94 wind 3 43200 > th dose dependent rect. 6 21
317 457.95 wind 1 43200 > th dose independent rect. 8 3
358 458.11 wind 3 43200 > th dose dependent rect. 4 23
385 458.25 wind 3 43200 > th dose dependent rect. 2 23
390 458.30 wind 3 43200 > th dose dependent no NA NA
438 458.49 wind 3 43200 > th dose dependent rect. 18 23
462 458.58 wind 9 43200 > th dose dependent rect. 18 13
464 458.59 wind 5 43200 > th dose independent rect. 6 13
469 458.61 temperature 30 720 > th dose independent rect. 14 22
477 458.66 temperature 30 720 < th dose independent rect. 11 19
486 458.71 humidity 80 43200 > th dose independent rect. 21 4
487 458.71 temperature 30 720 < th dose independent rect. 1 15
538 458.97 wind 3 43200 < th dose independent rect. 9 5
540 459.00 wind 9 43200 < th dose dependent rect. 12 2
554 459.04 temperature 20 30 > th dose dependent rect. 21 23
587 459.22 humidity 80 43200 < th dose dependent rect. 22 1
597 459.24 wind 1 43200 > th dose dependent rect. 12 2
619 459.33 wind 5 43200 < th dose independent sin 23 NA
692 459.67 wind 9 43200 < th dose dependent rect. 24 17
786 460.06 wind 9 43200 > th dose independent rect. 18 13
787 460.06 wind 5 43200 < th dose independent rect. 6 21
804 460.10 temperature 30 720 < th dose independent rect. 9 14
836 460.18 temperature 30 720 < th dose independent rect. 9 6
879 460.33 wind 5 43200 > th dose independent sin 23 NA
903 460.40 wind 5 43200 < th dose independent rect. 2 23
936 460.49 wind 7 43200 > th dose dependent rect. 13 22
959 460.56 wind 3 43200 < th dose independent rect. 8 7
969 460.59 wind 5 43200 < th dose independent no NA NA