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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0177400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.99 (0.0359) R2 : 0.238
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.76 (0.16) R2dE : 0.232 R2E : 0.238
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0295 (0.0796) R2dN8 : 0.000332 R2N8 : 0.00586
σ : 0.663
deviance : 202.82
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 25.4
memory length : 410
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.97 0.658 4.95 0.615 0.126 -1.74 0.148 -1.57 0.159 21.5 25.11 361 -- --
199.16 0.657 4.98 0.359 0.128 -1.61 0.258 -- 0.102 21.2 25.26 361 -- --
196.02 0.652 4.94 0.61 0.126 -1.75 -- -1.59 0.158 21.2 25 365 -- --
199.39 0.658 4.98 0.351 0.124 -1.6 -- -- 0.103 21.1 25.27 361 -- --
196.69 0.653 4.95 0.599 -- -1.73 -- -1.51 0.153 -- 25.2 408 -- --
236.24 0.721 4.91 0.769 0.308 -- 0.335 -- 0.433 18.7 -- -- -- --
236.53 0.72 4.91 0.763 0.31 -- -- -- 0.434 18.7 -- -- -- --
200.03 0.659 4.98 0.342 -- -1.62 -- -- 0.0879 -- 25.49 408 -- --
202.32 0.662 4.99 -- 0.109 -1.72 -- -- 0.0485 22.4 25.3 361 -- --
241.53 0.726 4.9 0.756 -- -- -- -- 0.427 -- -- -- -- --
251.88 0.742 4.92 -- 0.301 -- -- -- 0.349 18.9 -- -- -- --
202.82 0.663 4.99 -- -- -1.76 -- -- 0.0295 -- 25.4 410 -- --
256.61 0.748 4.92 -- -- -- -- -- 0.344 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 188.81 wind 3.0 14400 < th dose dependent rect. 22 1
2 189.26 humidity 50.0 14400 > th dose dependent rect. 5 1
5 189.73 humidity 90.0 14400 < th dose dependent rect. 2 1
13 191.04 temperature 20.0 270 > th dose dependent rect. 18 17
14 191.22 humidity 60.0 43200 < th dose independent rect. 3 7
20 191.52 wind 1.0 14400 < th dose dependent rect. 20 17
21 191.54 humidity 60.0 43200 < th dose independent rect. 23 11
23 191.67 wind 1.0 14400 < th dose independent rect. 22 1
43 192.05 wind 1.0 14400 > th dose independent rect. 11 2
46 192.08 humidity 60.0 43200 < th dose dependent rect. 9 1
48 192.09 humidity 70.0 43200 < th dose dependent rect. 4 5
50 192.13 wind 1.0 14400 > th dose independent rect. 22 1
56 192.28 wind 1.0 14400 < th dose dependent rect. 4 10
59 192.39 humidity 60.0 43200 > th dose independent rect. 8 1
63 192.45 humidity 60.0 43200 < th dose independent rect. 8 2
67 192.50 humidity 50.0 14400 > th dose dependent rect. 2 4
68 192.51 temperature 20.0 1440 < th dose independent rect. 5 1
77 192.64 temperature 20.0 1440 > th dose independent rect. 5 1
78 192.64 wind 1.0 14400 < th dose independent rect. 11 2
84 192.75 wind 1.0 14400 < th dose dependent sin 8 NA
113 193.16 humidity 60.0 43200 > th dose independent rect. 2 8
123 193.29 humidity 50.0 14400 > th dose dependent rect. 2 1
135 193.39 temperature 10.0 270 > th dose dependent sin 9 NA
136 193.40 wind 1.0 14400 > th dose independent rect. 5 9
137 193.41 temperature 30.0 270 < th dose dependent sin 9 NA
156 193.58 wind 3.0 14400 < th dose dependent rect. 5 3
172 193.72 wind 3.0 14400 < th dose dependent rect. 22 4
186 193.84 wind 3.0 14400 < th dose dependent rect. 20 6
189 193.86 humidity 60.0 43200 < th dose dependent rect. 23 11
208 194.05 wind 1.0 14400 < th dose independent rect. 6 7
216 194.12 wind 1.0 14400 < th dose independent rect. 5 9
227 194.18 wind 9.0 43200 < th dose independent rect. 15 1
228 194.18 wind 1.0 14400 > th dose independent rect. 21 16
249 194.34 temperature 15.0 270 > th dose dependent rect. 16 21
260 194.41 wind 1.0 14400 < th dose independent rect. 21 16
317 194.83 wind 1.0 14400 > th dose independent rect. 4 20
335 194.98 wind 1.0 14400 < th dose dependent rect. 11 2
343 195.03 humidity 50.0 14400 < th dose independent rect. 11 1
387 195.26 wind 1.0 14400 < th dose independent rect. 6 3
397 195.29 wind 9.0 14400 < th dose independent rect. 6 7
405 195.34 wind 1.0 14400 < th dose dependent rect. 8 1
420 195.42 wind 1.0 14400 < th dose independent rect. 4 20
446 195.56 wind 9.0 14400 < th dose independent rect. 4 10
450 195.58 wind 9.0 14400 < th dose independent rect. 1 13
456 195.62 wind 1.0 14400 < th dose dependent rect. 4 20
457 195.63 wind 1.0 14400 < th dose independent rect. 21 12
460 195.64 wind 3.0 14400 > th dose independent rect. 5 2
473 195.70 wind 9.0 43200 > th dose independent rect. 15 1
474 195.70 humidity 50.0 14400 < th dose dependent rect. 11 1
493 195.74 wind 1.0 14400 < th dose dependent rect. 4 22
500 195.77 wind 9.0 14400 > th dose dependent rect. 11 2
503 195.78 atmosphere 1010.0 14400 > th dose dependent rect. 11 2
512 195.82 temperature 25.0 270 < th dose dependent rect. 21 23
518 195.85 wind 1.0 14400 > th dose independent rect. 21 12
547 195.96 wind 1.0 14400 > th dose independent rect. 21 5
557 196.00 wind 9.0 14400 > th dose independent rect. 5 8
561 196.02 humidity 50.0 14400 > th dose independent rect. 11 1
564 196.04 humidity 80.0 43200 < th dose independent rect. 17 1
566 196.04 radiation 1.0 43200 < th dose dependent rect. 17 1
614 196.26 humidity 80.0 43200 > th dose independent rect. 18 1
643 196.37 atmosphere 1015.0 43200 > th dose independent rect. 21 6
654 196.39 temperature 25.0 270 < th dose dependent rect. 10 23
663 196.43 wind 1.0 14400 < th dose independent rect. 8 1
683 196.47 atmosphere 1015.0 43200 < th dose independent rect. 21 5
710 196.53 temperature 25.0 720 < th dose dependent rect. 5 21
730 196.59 wind 1.0 14400 < th dose independent rect. 22 5
766 196.66 atmosphere 1015.0 43200 < th dose independent rect. 20 16
769 196.66 temperature 25.0 270 < th dose dependent rect. 13 22
772 196.67 atmosphere 1015.0 43200 > th dose independent rect. 21 15
779 196.69 wind 1.0 14400 > th dose dependent rect. 5 2
797 196.72 temperature 20.0 1440 > th dose independent rect. 3 9
854 196.80 humidity 50.0 43200 > th dose independent rect. 22 15
863 196.81 humidity 50.0 43200 > th dose independent rect. 24 13
884 196.84 humidity 50.0 43200 > th dose independent rect. 3 10
885 196.84 wind 3.0 14400 < th dose independent rect. 1 14
904 196.87 wind 3.0 43200 > th dose independent rect. 1 1
923 196.89 precipitation 0.1 43200 > th dose dependent rect. 2 1
960 196.93 temperature 25.0 720 < th dose dependent rect. 10 21
967 196.95 wind 1.0 14400 > th dose independent sin 3 NA
973 196.96 wind 9.0 14400 > th dose independent rect. 10 3
995 196.98 humidity 50.0 43200 > th dose independent rect. 19 18