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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0176200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : O-methyltransferase, family 2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.29 (0.0367) R2 : 0.58
β1 : 2.29 (0.136) R2dD : 0.291 R2D : 0.143
β2 : 1.25 (0.0906) R2dC : 0.196 R2C : 0.166
β3 : 2.64 (0.202) R2dE : 0.143 R2E : 0.0275
β4 : 2.95 (0.369) R2dD*C : 0.0658 R2D*C : 0.0144
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.634 (0.0793) R2dN8 : 0.0851 R2N8 : -0.0198
σ : 0.684
deviance : 215.47
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_____
C
peak time of C : 21.1
E
wheather : radiation
threshold : 1.65
memory length : 833
response mode : < th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 17.5
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.33 0.67 4.38 2.12 1.48 4.32 3.95 7 0.518 18.3 0.7201 800 16.4 --
215.47 0.684 4.29 2.29 1.25 2.64 2.95 -- 0.634 21.1 1.65 833 17.5 --
233.9 0.712 4.31 2.04 1.27 3.33 -- 5.45 0.602 19.7 0.92 803 16.9 --
247.88 0.733 4.29 2.25 1.27 2.42 -- -- 0.68 21.2 1.66 813 17.5 --
281.05 0.781 4.24 1.87 -- 2.78 -- 5.86 0.554 -- 3.71 597 15.9 --
260.35 0.756 4.35 2.01 1.44 -- 2.43 -- 0.432 22.7 -- -- -- --
284.39 0.79 4.36 1.9 1.42 -- -- -- 0.422 23 -- -- -- --
285.63 0.787 4.29 1.97 -- 2.71 -- -- 0.559 -- 3.67 599 15.5 --
365.04 0.89 4.31 -- 0.829 2.5 -- -- 0.683 20.6 3.76 750 15.9 --
410.05 0.946 4.32 1.94 -- -- -- -- 0.433 -- -- -- -- --
380.01 0.912 4.4 -- 1.44 -- -- -- 0.21 23.1 -- -- -- --
386.94 0.916 4.32 -- -- 2.52 -- -- 0.491 -- 7.174 580 15.1 --
509.01 1.05 4.37 -- -- -- -- -- 0.218 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.24 radiation 1e+00 720 < th dose dependent rect. 6 20
5 207.73 radiation 1e+00 720 < th dose independent rect. 7 19
20 212.24 radiation 1e+00 720 < th dose dependent rect. 13 13
34 212.63 radiation 1e+00 720 < th dose dependent rect. 17 9
36 213.05 radiation 1e+00 720 < th dose independent sin 22 NA
38 213.12 radiation 1e+00 720 < th dose dependent sin 21 NA
45 213.78 radiation 1e+00 720 < th dose independent rect. 13 12
49 213.87 radiation 1e+00 720 < th dose independent rect. 20 23
67 214.84 radiation 1e+00 720 < th dose independent rect. 5 16
70 215.19 radiation 1e+00 720 < th dose independent rect. 17 9
74 215.34 radiation 1e+00 720 < th dose dependent rect. 20 23
86 216.17 radiation 1e+00 720 > th dose independent rect. 17 21
91 216.70 temperature 3e+01 10 < th dose dependent rect. 14 18
93 216.73 radiation 1e+00 720 < th dose dependent rect. 5 14
94 216.76 wind 5e+00 43200 > th dose independent rect. 19 2
95 216.80 radiation 1e+00 720 < th dose independent rect. 7 12
99 217.25 wind 5e+00 43200 < th dose independent rect. 19 2
102 217.50 radiation 1e+00 720 > th dose independent rect. 15 23
103 217.50 radiation 1e+00 720 < th dose dependent rect. 5 16
108 217.63 atmosphere 1e+03 43200 < th dose dependent rect. 4 1
118 217.84 radiation 1e+00 720 > th dose independent sin 22 NA
120 217.87 temperature 3e+01 270 < th dose independent rect. 13 6
129 217.97 wind 5e+00 43200 > th dose dependent rect. 19 2
132 218.06 radiation 1e+00 43200 < th dose dependent rect. 21 4
146 218.30 radiation 1e+00 43200 < th dose dependent rect. 21 7
148 218.36 wind 1e+00 43200 < th dose dependent rect. 20 1
151 218.41 atmosphere 1e+03 43200 < th dose independent rect. 4 1
165 218.61 atmosphere 1e+03 43200 > th dose independent rect. 5 1
186 218.88 radiation 1e+00 720 > th dose independent rect. 8 23
188 218.88 temperature 3e+01 10 < th dose dependent rect. 14 20
216 219.17 temperature 3e+01 270 < th dose independent rect. 14 16
244 219.40 radiation 1e+00 720 < th dose independent rect. 13 22
259 219.44 wind 9e+00 43200 > th dose dependent rect. 19 11
264 219.47 radiation 1e+00 720 < th dose independent no NA NA
273 219.49 atmosphere 1e+03 43200 > th dose independent rect. 7 1
280 219.50 radiation 1e+00 1440 < th dose dependent rect. 2 21
282 219.51 temperature 3e+01 270 < th dose independent rect. 13 18
302 219.53 radiation 1e+00 1440 < th dose dependent rect. 12 9
329 219.56 wind 9e+00 43200 > th dose independent rect. 19 2
345 219.58 radiation 1e+00 43200 < th dose dependent rect. 24 4
377 219.65 radiation 1e+00 720 < th dose dependent rect. 17 2
380 219.65 radiation 1e+00 1440 < th dose dependent rect. 11 22
396 219.68 radiation 1e+00 1440 < th dose dependent rect. 22 23
397 219.69 radiation 1e+00 1440 < th dose dependent no NA NA
398 219.69 radiation 1e+00 43200 < th dose dependent rect. 24 1
501 219.89 wind 9e+00 43200 < th dose independent rect. 19 2
509 219.92 radiation 1e+00 1440 < th dose dependent rect. 15 23
586 220.04 radiation 1e+00 720 > th dose independent rect. 6 13
699 220.24 atmosphere 1e+03 43200 < th dose dependent sin 10 NA
829 220.47 wind 9e+00 43200 > th dose dependent rect. 19 6
855 220.53 temperature 3e+01 720 < th dose independent sin 14 NA
859 220.53 precipitation 1e-01 43200 > th dose dependent rect. 20 1
863 220.54 precipitation 1e-01 43200 > th dose independent rect. 17 1
873 220.56 atmosphere 1e+03 43200 < th dose independent sin 8 NA
893 220.61 atmosphere 1e+03 43200 > th dose independent sin 8 NA
920 220.66 atmosphere 1e+03 43200 > th dose independent rect. 9 1
966 220.75 precipitation 1e-01 43200 < th dose independent rect. 17 1
968 220.75 precipitation 1e-01 43200 < th dose dependent rect. 17 1