Os04g0175900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Winged helix repressor DNA-binding domain containing protein.
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Os04g0175900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Winged helix repressor DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.33 | 0.694 | 8.03 | -3.23 | 2.51 | 2.46 | 2.11 | -0.986 | 0.0179 | 19.5 | 21.4 | 706 | 23.5 | -- |
| 219.77 | 0.69 | 8 | -3.05 | 2.42 | 2.56 | 2.1 | -- | 0.0646 | 19.8 | 21.4 | 679 | 23.1 | -- |
| 230.48 | 0.707 | 8.03 | -3.25 | 2.57 | 2.38 | -- | -0.94 | 0.0322 | 19.4 | 21.41 | 708 | 23.7 | -- |
| 231.47 | 0.709 | 7.99 | -3.07 | 2.41 | 2.4 | -- | -- | 0.0976 | 19.3 | 21.41 | 769 | 23.7 | -- |
| 361.59 | 0.89 | 7.83 | -2.49 | -- | -2.67 | -- | -1.69 | 0.568 | -- | -2.274 | 1399 | 24 | -- |
| 356.78 | 0.886 | 7.88 | -2.45 | 2.69 | -- | 1.49 | -- | 0.572 | 17.6 | -- | -- | -- | -- |
| 362.14 | 0.891 | 7.88 | -2.46 | 2.7 | -- | -- | -- | 0.579 | 17.6 | -- | -- | -- | -- |
| 362.14 | 0.886 | 7.82 | -2.46 | -- | -2.7 | -- | -- | 0.579 | -- | 2.858 | 47520 | 0.41 | -- |
| 457.95 | 0.997 | 7.91 | -- | 2.77 | 1.46 | -- | -- | 0.525 | 18.5 | 22.1 | 696 | 0.31 | -- |
| 740.43 | 1.27 | 7.84 | -2.54 | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
| 521 | 1.07 | 7.82 | -- | 2.74 | -- | -- | -- | 0.853 | 17.6 | -- | -- | -- | -- |
| 521 | 1.06 | 7.76 | -- | -- | -2.74 | -- | -- | 0.853 | -- | -1.519 | 47520 | 0.449 | -- |
| 910.96 | 1.41 | 7.78 | -- | -- | -- | -- | -- | 0.796 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 223.60 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 16 | 232.16 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 6 |
| 34 | 235.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 47 | 237.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 51 | 237.79 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 53 | 237.91 | temperature | 25 | 720 | < th | dose dependent | sin | 5 | NA |
| 115 | 241.18 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 208 | 246.13 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 255 | 248.45 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 292 | 249.78 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 7 |
| 294 | 249.79 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 302 | 250.08 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 325 | 250.97 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 15 |
| 566 | 258.40 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 856 | 265.97 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 865 | 266.28 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 872 | 266.41 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 877 | 266.47 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 923 | 267.58 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 10 |
| 926 | 267.62 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 939 | 267.82 | radiation | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 965 | 268.19 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 982 | 268.39 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 988 | 268.50 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 1 |