Os04g0175600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 0-methyltransferase (EC 2.1.1.6) (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0175600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 0-methyltransferase (EC 2.1.1.6) (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 635.06 | 1.18 | 7.67 | 3.64 | 3.01 | 3.53 | 1.24 | -0.245 | 1.07 | 23.7 | 80.1 | 1479 | 20.5 | -- |
| 635.11 | 1.17 | 7.67 | 3.61 | 3.01 | 3.51 | 1.24 | -- | 1.07 | 23.7 | 80.01 | 1479 | 20.5 | -- |
| 641.38 | 1.18 | 7.68 | 3.56 | 3 | 3.5 | -- | 0.0302 | 1.05 | 23.8 | 80.1 | 1471 | 20.5 | -- |
| 641.33 | 1.18 | 7.67 | 3.56 | 3 | 3.47 | -- | -- | 1.06 | 23.8 | 80.16 | 1471 | 20.5 | -- |
| 1197.87 | 1.61 | 7.57 | 3.72 | -- | 3.32 | -- | -0.908 | 1.2 | -- | 80.9 | 1416 | 19.2 | -- |
| 799.59 | 1.33 | 7.76 | 3.2 | 2.98 | -- | 0.803 | -- | 0.672 | 23.8 | -- | -- | -- | -- |
| 802.24 | 1.33 | 7.76 | 3.17 | 2.98 | -- | -- | -- | 0.667 | 23.9 | -- | -- | -- | -- |
| 1197.89 | 1.61 | 7.6 | 3.59 | -- | 3.14 | -- | -- | 1.14 | -- | 80.34 | 1414 | 18.9 | -- |
| 922.72 | 1.41 | 7.69 | -- | 3.02 | 3.24 | -- | -- | 0.916 | 23.8 | 86 | 1577 | 18.6 | -- |
| 1360.2 | 1.72 | 7.69 | 3.26 | -- | -- | -- | -- | 0.707 | -- | -- | -- | -- | -- |
| 1066.89 | 1.53 | 7.84 | -- | 3.02 | -- | -- | -- | 0.314 | 24 | -- | -- | -- | -- |
| 1488.33 | 1.8 | 7.68 | -- | -- | 3.12 | -- | -- | 0.805 | -- | 85.52 | 1437 | 18 | -- |
| 1640.3 | 1.89 | 7.77 | -- | -- | -- | -- | -- | 0.345 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 623.32 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 2 | 624.26 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 27 | 632.84 | humidity | 70 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 43 | 636.42 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 47 | 637.16 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 54 | 637.98 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 147 | 645.51 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 194 | 648.44 | humidity | 50 | 1440 | > th | dose dependent | sin | 3 | NA |
| 217 | 649.70 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 261 | 652.12 | humidity | 90 | 1440 | < th | dose dependent | sin | 4 | NA |
| 482 | 661.04 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 493 | 661.29 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 19 |
| 510 | 661.62 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 536 | 662.95 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 537 | 662.96 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 558 | 663.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 560 | 663.53 | humidity | 90 | 10 | < th | dose dependent | rect. | 8 | 13 |
| 564 | 663.67 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 582 | 663.86 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 21 |
| 596 | 664.29 | humidity | 90 | 30 | < th | dose dependent | rect. | 8 | 11 |
| 608 | 664.47 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 633 | 665.25 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 647 | 665.60 | humidity | 90 | 30 | < th | dose dependent | rect. | 8 | 15 |
| 697 | 666.81 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 21 |
| 729 | 667.59 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 775 | 668.48 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 840 | 669.71 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 21 |
| 841 | 669.71 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 20 |
| 843 | 669.72 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 859 | 669.93 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 881 | 670.26 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 897 | 670.48 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 935 | 670.87 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 950 | 671.10 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 18 |
| 969 | 671.40 | humidity | 80 | 30 | < th | dose independent | rect. | 8 | 11 |
| 976 | 671.50 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 977 | 671.51 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 23 |
| 987 | 671.71 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 23 |
| 991 | 671.81 | humidity | 80 | 10 | > th | dose dependent | rect. | 6 | 14 |