Os04g0175500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transferase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0175500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Transferase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 437.01 | 0.982 | 5.54 | 1.76 | 1.6 | -2.26 | 2.25 | -1.86 | -0.697 | 17.9 | 21.5 | 1762 | -- | -- |
| 440.19 | 0.977 | 5.47 | 2.05 | 1.65 | -2.02 | 2.33 | -- | -0.604 | 18 | 22 | 1948 | -- | -- |
| 447.18 | 0.985 | 5.52 | 1.82 | 1.59 | -2.15 | -- | -1.38 | -0.66 | 17.8 | 21.73 | 1760 | -- | -- |
| 450.21 | 0.988 | 5.46 | 2.1 | 1.59 | -2.01 | -- | -- | -0.549 | 17.8 | 22.1 | 1758 | -- | -- |
| 564.91 | 1.11 | 5.47 | 1.67 | -- | -2.08 | -- | -1.08 | -0.654 | -- | 22 | 1380 | -- | -- |
| 582.43 | 1.13 | 5.61 | 1.3 | 1.56 | -- | 1.97 | -- | -1.22 | 17.9 | -- | -- | -- | -- |
| 591.79 | 1.14 | 5.61 | 1.29 | 1.57 | -- | -- | -- | -1.21 | 17.8 | -- | -- | -- | -- |
| 567.45 | 1.11 | 5.43 | 1.98 | -- | -2.03 | -- | -- | -0.572 | -- | 22.11 | 1380 | -- | -- |
| 540.05 | 1.08 | 5.55 | -- | 1.67 | -1.43 | -- | -- | -0.857 | 18.3 | 22.3 | 736 | -- | -- |
| 719.3 | 1.25 | 5.58 | 1.24 | -- | -- | -- | -- | -1.24 | -- | -- | -- | -- | -- |
| 635.61 | 1.18 | 5.64 | -- | 1.55 | -- | -- | -- | -1.35 | 17.8 | -- | -- | -- | -- |
| 659.82 | 1.2 | 5.51 | -- | -- | -1.5 | -- | -- | -0.913 | -- | 22.4 | 1305 | -- | -- |
| 759.89 | 1.29 | 5.61 | -- | -- | -- | -- | -- | -1.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 439.66 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 2 | 441.92 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 4 | 443.46 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 10 | 449.34 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 18 | 454.51 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 20 | 454.61 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 23 | 454.70 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 25 | 454.79 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 30 | 455.06 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 36 | 455.18 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 42 | 455.47 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 13 |
| 49 | 455.60 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 52 | 455.65 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 53 | 455.77 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 16 |
| 58 | 455.92 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 67 | 456.17 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 75 | 456.28 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 76 | 456.29 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 92 | 456.61 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 15 | NA |
| 130 | 457.31 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 144 | 457.66 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 153 | 457.74 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 238 | 459.62 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 271 | 460.26 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 272 | 460.27 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 279 | 460.37 | radiation | 30.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 284 | 460.44 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 296 | 460.59 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 320 | 460.96 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 410 | 463.02 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 439 | 463.46 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 443 | 463.50 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 493 | 464.54 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 19 |
| 602 | 466.00 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 608 | 466.11 | temperature | 20.0 | 1440 | > th | dose independent | sin | 9 | NA |
| 610 | 466.12 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 625 | 466.25 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 637 | 466.41 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 661 | 466.66 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 680 | 466.93 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 727 | 467.48 | humidity | 60.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 736 | 467.56 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 770 | 468.00 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 854 | 468.85 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 858 | 468.89 | temperature | 20.0 | 1440 | < th | dose independent | sin | 9 | NA |
| 952 | 469.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 953 | 469.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 955 | 469.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 964 | 470.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 994 | 470.40 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 5 | 1 |