Os04g0175400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0175400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 380.95 | 0.917 | 6.01 | 4.3 | 1.86 | 2.25 | 1.53 | 0.355 | 0.674 | 20.5 | 51.83 | 1408 | -- | -- |
| 381.11 | 0.909 | 6 | 4.34 | 1.86 | 2.28 | 1.52 | -- | 0.682 | 20.6 | 52 | 1397 | -- | -- |
| 387.88 | 0.917 | 6.01 | 4.24 | 1.87 | 2.26 | -- | 0.483 | 0.675 | 20.8 | 53 | 1374 | -- | -- |
| 388.22 | 0.918 | 6.01 | 4.29 | 1.86 | 2.29 | -- | -- | 0.681 | 20.8 | 52.01 | 1377 | -- | -- |
| 578.99 | 1.12 | 5.95 | 4.22 | -- | 2.25 | -- | 0.271 | 0.668 | -- | 55.11 | 1434 | -- | -- |
| 509.42 | 1.06 | 6.03 | 4.22 | 1.88 | -- | 1.56 | -- | 0.581 | 20.2 | -- | -- | -- | -- |
| 516.52 | 1.06 | 6.03 | 4.17 | 1.87 | -- | -- | -- | 0.581 | 20.4 | -- | -- | -- | -- |
| 578.97 | 1.12 | 5.95 | 4.26 | -- | 2.3 | -- | -- | 0.685 | -- | 55.11 | 1434 | -- | -- |
| 830.36 | 1.34 | 6.02 | -- | 1.82 | 3.21 | -- | -- | 0.588 | 20.4 | 81.2 | 1488 | -- | -- |
| 711.78 | 1.25 | 5.98 | 4.16 | -- | -- | -- | -- | 0.561 | -- | -- | -- | -- | -- |
| 975.12 | 1.46 | 6.13 | -- | 1.86 | -- | -- | -- | 0.116 | 20.5 | -- | -- | -- | -- |
| 1017.82 | 1.49 | 5.98 | -- | -- | 3.25 | -- | -- | 0.556 | -- | 80.96 | 1450 | -- | -- |
| 1168.31 | 1.6 | 6.08 | -- | -- | -- | -- | -- | 0.0992 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 376.47 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 13 |
| 4 | 377.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 5 | 377.94 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 13 |
| 7 | 378.06 | humidity | 60.0 | 1440 | > th | dose dependent | sin | 20 | NA |
| 11 | 378.17 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 17 | 378.62 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 46 | 379.20 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 94 | 380.13 | humidity | 80.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 95 | 380.13 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 159 | 380.77 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 208 | 381.23 | humidity | 80.0 | 1440 | > th | dose independent | sin | 23 | NA |
| 225 | 381.40 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 10 |
| 240 | 381.60 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 251 | 381.86 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 307 | 382.48 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 12 |
| 325 | 382.75 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 327 | 382.80 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 19 |
| 328 | 382.81 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 330 | 382.82 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 17 |
| 335 | 382.83 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 10 | 15 |
| 346 | 382.90 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 348 | 382.91 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 427 | 383.69 | humidity | 70.0 | 1440 | > th | dose independent | sin | 18 | NA |
| 428 | 383.69 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 452 | 383.96 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 464 | 384.17 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 6 | 17 |
| 610 | 385.46 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 15 | 4 |
| 644 | 385.76 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 6 |
| 664 | 385.91 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 8 |
| 665 | 385.91 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 670 | 385.93 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 14 |
| 671 | 385.95 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 672 | 385.95 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 13 | 12 |
| 675 | 385.96 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 697 | 386.11 | humidity | 70.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 739 | 386.43 | wind | 3.0 | 43200 | > th | dose independent | rect. | 3 | 7 |
| 780 | 386.57 | humidity | 90.0 | 1440 | < th | dose dependent | no | NA | NA |
| 781 | 386.59 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 812 | 386.83 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 833 | 386.90 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 848 | 387.07 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 852 | 387.09 | wind | 3.0 | 43200 | < th | dose independent | rect. | 3 | 7 |
| 898 | 387.58 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 941 | 388.21 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 943 | 388.26 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 981 | 388.48 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 985 | 388.53 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 18 | 14 |