Os04g0175300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0175300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 198.91 | 0.663 | 5.13 | 0.924 | 1.53 | 1.53 | 0.751 | 2.23 | 1.74 | 23 | 52 | 1593 | -- | -- |
| 206.93 | 0.67 | 5.12 | 1.16 | 1.51 | 1.68 | 0.901 | -- | 1.76 | 23 | 50.33 | 1584 | -- | -- |
| 201.2 | 0.661 | 5.13 | 0.869 | 1.53 | 1.52 | -- | 2.4 | 1.74 | 23 | 52.88 | 1609 | -- | -- |
| 210.25 | 0.675 | 5.12 | 1.14 | 1.51 | 1.72 | -- | -- | 1.78 | 22.9 | 50.54 | 1618 | -- | -- |
| 332.69 | 0.854 | 5.09 | 1.05 | -- | 1.34 | -- | 0.932 | 1.77 | -- | 62.49 | 1610 | -- | -- |
| 278.48 | 0.782 | 5.14 | 1.11 | 1.57 | -- | 0.721 | -- | 1.71 | 23.3 | -- | -- | -- | -- |
| 280.71 | 0.785 | 5.14 | 1.08 | 1.57 | -- | -- | -- | 1.7 | 23.3 | -- | -- | -- | -- |
| 335.54 | 0.857 | 5.09 | 1.08 | -- | 1.36 | -- | -- | 1.78 | -- | 62.49 | 1610 | -- | -- |
| 244.15 | 0.728 | 5.14 | -- | 1.51 | 1.74 | -- | -- | 1.7 | 22.8 | 58.84 | 1630 | -- | -- |
| 434.55 | 0.974 | 5.1 | 1.12 | -- | -- | -- | -- | 1.72 | -- | -- | -- | -- | -- |
| 311.66 | 0.826 | 5.17 | -- | 1.58 | -- | -- | -- | 1.58 | 23.4 | -- | -- | -- | -- |
| 366.07 | 0.894 | 5.11 | -- | -- | 1.38 | -- | -- | 1.66 | -- | 62.49 | 1610 | -- | -- |
| 467.84 | 1.01 | 5.13 | -- | -- | -- | -- | -- | 1.59 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 190.27 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 2 | 190.76 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 3 | 192.41 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 14 | 192.52 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 16 | 193.73 | humidity | 80 | 14400 | > th | dose independent | rect. | 13 | 7 |
| 28 | 194.17 | humidity | 80 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 30 | 194.52 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 32 | 194.93 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 37 | 194.99 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 50 | 195.29 | humidity | 60 | 14400 | > th | dose dependent | rect. | 14 | 5 |
| 54 | 195.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 56 | 195.50 | humidity | 60 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 62 | 195.57 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 91 | 195.96 | humidity | 80 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 110 | 196.48 | humidity | 90 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 114 | 196.52 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 4 |
| 130 | 196.77 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 172 | 197.31 | humidity | 60 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 177 | 197.34 | wind | 3 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 251 | 197.99 | humidity | 70 | 14400 | < th | dose independent | sin | 13 | NA |
| 285 | 198.34 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 335 | 198.66 | humidity | 80 | 14400 | > th | dose independent | sin | 21 | NA |
| 361 | 198.78 | humidity | 70 | 14400 | > th | dose independent | sin | 13 | NA |
| 362 | 198.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 391 | 198.84 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 413 | 198.96 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 4 |
| 456 | 199.23 | humidity | 60 | 14400 | > th | dose dependent | sin | 19 | NA |
| 483 | 199.41 | humidity | 60 | 1440 | > th | dose dependent | rect. | 2 | 19 |
| 541 | 199.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 557 | 199.72 | humidity | 80 | 14400 | < th | dose independent | sin | 21 | NA |
| 629 | 199.94 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 9 |
| 646 | 200.04 | wind | 5 | 43200 | < th | dose dependent | rect. | 24 | 7 |
| 651 | 200.05 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 654 | 200.06 | wind | 5 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 685 | 200.18 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 772 | 200.34 | humidity | 50 | 1440 | > th | dose dependent | rect. | 4 | 23 |
| 801 | 200.40 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 804 | 200.40 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 834 | 200.43 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 869 | 200.46 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 898 | 200.48 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 938 | 200.59 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 23 |