Os04g0175000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0175000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.35 | 0.491 | 6.82 | 0.861 | 0.576 | 1.12 | -0.611 | -0.715 | -0.178 | 14.4 | 72.92 | 1381 | -- | -- |
| 109.9 | 0.488 | 6.82 | 0.793 | 0.56 | 1.07 | -0.644 | -- | -0.196 | 14.4 | 72.64 | 1363 | -- | -- |
| 110.65 | 0.49 | 6.82 | 0.852 | 0.56 | 1.1 | -- | -0.753 | -0.187 | 14.4 | 72.9 | 1356 | -- | -- |
| 111.34 | 0.491 | 6.82 | 0.766 | 0.558 | 1.08 | -- | -- | -0.198 | 14.4 | 73.65 | 1366 | -- | -- |
| 122.83 | 0.516 | 6.82 | 0.891 | -- | 1.24 | -- | -0.834 | -0.171 | -- | 68 | 1184 | -- | -- |
| 125.91 | 0.526 | 6.85 | 0.824 | 0.634 | -- | -0.541 | -- | -0.309 | 14.5 | -- | -- | -- | -- |
| 126.95 | 0.528 | 6.85 | 0.81 | 0.633 | -- | -- | -- | -0.312 | 14.5 | -- | -- | -- | -- |
| 123.76 | 0.518 | 6.82 | 0.791 | -- | 1.19 | -- | -- | -0.196 | -- | 67.64 | 1185 | -- | -- |
| 126.44 | 0.524 | 6.83 | -- | 0.609 | 1.23 | -- | -- | -0.151 | 14.2 | 79.9 | 1439 | -- | -- |
| 150.45 | 0.573 | 6.85 | 0.783 | -- | -- | -- | -- | -0.328 | -- | -- | -- | -- | -- |
| 144.24 | 0.562 | 6.87 | -- | 0.617 | -- | -- | -- | -0.402 | 14.5 | -- | -- | -- | -- |
| 138.83 | 0.549 | 6.84 | -- | -- | 1.36 | -- | -- | -0.26 | -- | 76.56 | 1208 | -- | -- |
| 166.62 | 0.603 | 6.87 | -- | -- | -- | -- | -- | -0.415 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 105.97 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 14 |
| 4 | 106.04 | wind | 3 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 7 | 106.14 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 8 | 106.15 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 15 |
| 11 | 106.17 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 14 | 106.24 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 15 | 106.27 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 3 |
| 30 | 106.42 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 34 | 106.45 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 18 |
| 44 | 106.50 | wind | 3 | 43200 | < th | dose independent | sin | 5 | NA |
| 45 | 106.51 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 2 |
| 48 | 106.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 51 | 106.55 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 11 |
| 59 | 106.58 | wind | 3 | 43200 | < th | dose independent | rect. | 24 | 7 |
| 69 | 106.64 | wind | 3 | 43200 | > th | dose independent | sin | 4 | NA |
| 76 | 106.66 | wind | 3 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 79 | 106.69 | wind | 1 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 82 | 106.71 | wind | 5 | 43200 | < th | dose dependent | rect. | 20 | 11 |
| 84 | 106.71 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 115 | 106.83 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 118 | 106.83 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 16 |
| 125 | 106.86 | wind | 3 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 144 | 106.92 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 150 | 106.93 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 11 |
| 160 | 106.97 | wind | 3 | 43200 | < th | dose dependent | sin | 7 | NA |
| 186 | 107.02 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 3 |
| 194 | 107.03 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 205 | 107.05 | wind | 5 | 43200 | < th | dose dependent | sin | 4 | NA |
| 229 | 107.13 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 19 |
| 244 | 107.16 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 19 |
| 319 | 107.31 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 323 | 107.32 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 357 | 107.40 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 392 | 107.45 | wind | 1 | 43200 | > th | dose dependent | sin | 4 | NA |
| 459 | 107.56 | wind | 9 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 469 | 107.58 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 474 | 107.59 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 8 |
| 483 | 107.60 | wind | 1 | 43200 | > th | dose dependent | rect. | 19 | 12 |
| 530 | 107.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 11 |
| 564 | 107.72 | wind | 9 | 43200 | < th | dose dependent | sin | 10 | NA |
| 619 | 107.80 | wind | 1 | 43200 | > th | dose dependent | sin | 10 | NA |
| 652 | 107.87 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 655 | 107.87 | wind | 9 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 700 | 107.93 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 707 | 107.94 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 882 | 108.20 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 913 | 108.23 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 7 |
| 945 | 108.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 969 | 108.31 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 984 | 108.32 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 2 |
| 992 | 108.33 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 5 |