Os04g0174900 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0174900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Phospholipase/Carboxylesterase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.32	(0.0465)	R²	:	0.24
β₁	:	1.34	(0.182)	R²_dD	:	0.111	R²_D	:	-0.023
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	2.17	(0.191)	R²_dE	:	0.284	R²_E	:	0.124
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.302	(0.106)	R²_dN8	:	0.0216	R²_N8	:	-0.0421
σ	:	0.853
deviance	:	335.09
__

_____

C
peak time of C	:	--
E
wheather	:	temperature
threshold	:	31.66
memory length	:	2320
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
334.61	0.859	3.32	1.21	0.164	2.36	0.504	0.143	0.3	8.34	31.25	1428	--	--
334.62	0.852	3.31	1.24	0.165	2.35	0.5	--	0.3	8.34	31.5	1428	--	--
335.37	0.853	3.32	1.22	0.169	2.35	--	0.172	0.299	8.5	31.4	1446	--	--
335.12	0.853	3.31	1.26	0.172	2.34	--	--	0.303	10.5	31.62	1520	--	--
334.98	0.852	3.33	1.25	--	2.17	--	0.354	0.297	--	30.96	2335	--	--
426.71	0.968	3.42	0.49	0.209	--	0.375	--	-0.176	10.7	--	--	--	--
427.22	0.968	3.42	0.507	0.208	--	--	--	-0.173	11.5	--	--	--	--
335.09	0.853	3.32	1.34	--	2.17	--	--	0.302	--	31.66	2320	--	--
370	0.901	3.36	--	0.849	2.17	--	--	0.0814	13.6	31.62	1520	--	--
429.94	0.969	3.43	0.501	--	--	--	--	-0.176	--	--	--	--	--
433.99	0.974	3.43	--	0.203	--	--	--	-0.23	11.3	--	--	--	--
371.03	0.897	3.37	--	--	1.86	--	--	0.0675	--	31.7	1128	--	--
436.57	0.975	3.44	--	--	--	--	--	-0.231	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	333.19	temperature	10	1440	> th	dose dependent	sin	9	NA
5	333.29	temperature	30	1440	< th	dose dependent	rect.	1	1
8	333.33	temperature	10	1440	> th	dose dependent	rect.	1	1
13	333.45	temperature	30	1440	< th	dose dependent	sin	10	NA
17	333.52	temperature	10	1440	> th	dose dependent	rect.	21	17
24	333.61	temperature	30	1440	< th	dose dependent	rect.	17	15
26	333.63	temperature	30	1440	< th	dose dependent	rect.	24	3
28	333.64	temperature	10	1440	> th	dose dependent	rect.	17	15
40	333.73	temperature	30	1440	< th	dose dependent	rect.	24	9
49	333.76	temperature	10	1440	> th	dose dependent	rect.	24	9
51	333.76	temperature	10	1440	> th	dose dependent	rect.	22	11
65	333.83	temperature	30	1440	< th	dose dependent	rect.	13	19
67	333.84	temperature	30	1440	< th	dose dependent	rect.	17	11
86	333.89	temperature	10	1440	> th	dose dependent	rect.	17	11
149	334.03	temperature	10	1440	> th	dose dependent	rect.	17	21
169	334.07	temperature	10	1440	> th	dose dependent	rect.	13	18
215	334.18	temperature	30	1440	< th	dose dependent	rect.	17	21
222	334.20	temperature	30	1440	< th	dose dependent	rect.	22	5
235	334.24	temperature	10	1440	> th	dose dependent	rect.	22	5
268	334.30	temperature	30	1440	< th	dose dependent	rect.	20	18
280	334.34	temperature	10	1440	> th	dose dependent	rect.	21	7
310	334.38	temperature	10	1440	> th	dose dependent	rect.	11	20
418	334.63	temperature	30	1440	< th	dose dependent	rect.	20	22
536	334.90	temperature	30	1440	< th	dose dependent	no	NA	NA
641	335.18	temperature	10	1440	> th	dose dependent	no	NA	NA