Os04g0174800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os04g0174800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.15 | 0.431 | 11 | 1 | 2.29 | -2 | -0.627 | -1.66 | 0.66 | 14.5 | 24.9 | 271 | 1.2 | 4.01 |
| 87.65 | 0.436 | 11 | 1.09 | 2.26 | -2.15 | -0.441 | -- | 0.663 | 14.5 | 25 | 247 | 1.2 | 4.23 |
| 85 | 0.429 | 11 | 1.01 | 2.3 | -2.01 | -- | -1.23 | 0.659 | 14.5 | 24.99 | 267 | 1.19 | 4 |
| 86.27 | 0.433 | 11 | 1.08 | 2.31 | -2.19 | -- | -- | 0.677 | 14.6 | 24.9 | 236 | 1.47 | 3.81 |
| 280.48 | 0.78 | 11 | 1.14 | -- | -2.79 | -- | -0.601 | 0.867 | -- | 27.23 | 154 | 0.867 | 5.18 |
| 167.61 | 0.607 | 11 | 0.988 | 3.37 | -- | 0.639 | -- | 0.766 | 15.6 | -- | -- | -- | -- |
| 168.86 | 0.609 | 11 | 0.998 | 3.37 | -- | -- | -- | 0.769 | 15.5 | -- | -- | -- | -- |
| 263.72 | 0.756 | 11 | 1.06 | -- | -2.84 | -- | -- | 0.834 | -- | 174.6 | 204 | 0.0167 | 5.88 |
| 117 | 0.504 | 11 | -- | 2.34 | -2.08 | -- | -- | 0.619 | 14.7 | 25 | 235 | 1.5 | 3.8 |
| 804.76 | 1.33 | 11 | 0.857 | -- | -- | -- | -- | 0.68 | -- | -- | -- | -- | -- |
| 195.14 | 0.653 | 11.1 | -- | 3.36 | -- | -- | -- | 0.658 | 15.5 | -- | -- | -- | -- |
| 294 | 0.799 | 11 | -- | -- | -2.8 | -- | -- | 0.734 | -- | 134.1 | 209 | 0.00341 | 5.94 |
| 824.12 | 1.34 | 11 | -- | -- | -- | -- | -- | 0.585 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.53 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 2 | 89.33 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 3 | 89.33 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 4 | 89.43 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 8 | 90.11 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 14 | 90.74 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 18 | 90.90 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 28 | 91.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 31 | 91.74 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 34 | 91.74 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 35 | 91.74 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 37 | 91.74 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 40 | 91.74 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 41 | 91.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 42 | 91.77 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 46 | 91.83 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 76 | 93.16 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 79 | 93.16 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 82 | 93.16 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 3 |
| 83 | 93.16 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 85 | 93.16 | radiation | 20.0 | 90 | < th | dose independent | rect. | 3 | 3 |
| 115 | 93.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 20 |
| 116 | 93.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 140 | 95.74 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 141 | 95.74 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 155 | 95.82 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 156 | 95.83 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 4 |
| 161 | 96.05 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 179 | 97.21 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 189 | 97.53 | wind | 5.0 | 10 | < th | dose dependent | rect. | 3 | 5 |
| 201 | 98.22 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 219 | 98.39 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 14 |
| 220 | 98.39 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 221 | 98.47 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 2 |
| 235 | 99.05 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 267 | 99.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 5 |
| 294 | 99.99 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 300 | 100.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 305 | 100.28 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 21 |
| 311 | 100.54 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 371 | 101.64 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 376 | 101.84 | wind | 9.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 385 | 102.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 386 | 102.14 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 387 | 102.18 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 388 | 102.21 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 14 |
| 389 | 102.25 | temperature | 10.0 | 270 | > th | dose independent | rect. | 15 | 10 |
| 391 | 102.25 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 410 | 102.64 | radiation | 40.0 | 270 | < th | dose independent | rect. | 15 | 10 |
| 435 | 102.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 454 | 103.28 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 15 | 10 |
| 455 | 103.28 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 505 | 103.76 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 584 | 104.80 | wind | 1.0 | 270 | > th | dose independent | rect. | 6 | 19 |
| 590 | 104.94 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 608 | 105.21 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 3 | 3 |
| 643 | 105.43 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 1 |
| 657 | 105.67 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 3 | 4 |
| 752 | 106.21 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 4 | 2 |
| 849 | 107.17 | temperature | 15.0 | 270 | > th | dose independent | rect. | 10 | 11 |
| 874 | 107.49 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 876 | 107.51 | radiation | 1.0 | 270 | < th | dose dependent | sin | 4 | NA |
| 900 | 107.84 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 901 | 107.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 904 | 107.84 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 908 | 107.84 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 913 | 107.84 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 914 | 107.84 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 919 | 107.84 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |