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Os04g0174100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.6 (0.0604) R2 : 0.781
β1 : 2.05 (0.242) R2dD : 0.0453 R2D : 0.132
β2 : 2.46 (0.15) R2dC : 0.129 R2C : 0.165
β3 : 5.51 (0.225) R2dE : 0.413 R2E : 0.59
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.656 (0.14) R2dN8 : 0.0177 R2N8 : 0.0571
σ : 1.1
deviance : 557.36
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C
peak time of C : 4.15
E
wheather : temperature
threshold : 15.68
memory length : 4292
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.27
open length of G : 0.433

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
556.9 1.11 7.63 1.79 2.47 5.48 -0.52 -0.878 0.599 4.11 15.62 4283 2.28 0.816
558.04 1.1 7.62 2.03 2.46 5.48 -0.548 -- 0.627 4.13 15.73 4283 2.27 0.75
557.42 1.1 7.62 1.87 2.47 5.44 -- -0.831 0.61 4.14 15.76 4281 2.28 0.817
557.36 1.1 7.6 2.05 2.46 5.51 -- -- 0.656 4.15 15.68 4292 2.27 0.433
735.54 1.26 7.73 2.09 -- 5.43 -- -0.811 0.874 -- 15.59 4780 2.28 0.905
1286.27 1.68 7.25 4.75 2.7 -- -0.966 -- 2.17 4.15 -- -- -- --
1288.86 1.68 7.25 4.76 2.69 -- -- -- 2.17 4.18 -- -- -- --
682.87 1.22 7.65 1.8 -- 6.95 -- -- 0.511 -- 12.76 4808 1.4 0.983
595.61 1.14 7.58 -- 2.52 5.91 -- -- 0.132 3.96 14.84 10008 2.22 0.618
1681.78 1.92 7.26 4.87 -- -- -- -- 2.24 -- -- -- -- --
1885.21 2.03 7.37 -- 2.79 -- -- -- 1.64 4.15 -- -- -- --
719.57 1.25 7.74 -- -- 7.96 -- -- 0.0409 -- 10.73 6245 1.57 0.834
2306.13 2.24 7.38 -- -- -- -- -- 1.7 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 516.53 radiation 1 43200 < th dose dependent rect. 17 2
2 516.55 radiation 1 43200 < th dose dependent rect. 17 10
4 516.60 radiation 1 43200 < th dose dependent rect. 17 8
7 516.63 radiation 1 43200 < th dose dependent rect. 17 5
24 521.53 radiation 1 43200 < th dose dependent sin 15 NA
25 521.71 radiation 1 43200 < th dose dependent rect. 13 16
26 521.72 radiation 1 43200 < th dose dependent rect. 8 21
49 523.38 radiation 1 43200 < th dose dependent rect. 8 11
53 523.45 radiation 1 43200 < th dose dependent rect. 8 14
57 523.46 radiation 1 43200 < th dose dependent rect. 8 17
90 524.16 radiation 1 43200 < th dose dependent rect. 17 22
130 525.55 radiation 1 43200 < th dose dependent rect. 13 21
183 526.45 radiation 1 43200 < th dose dependent rect. 2 17
185 526.48 radiation 1 43200 < th dose dependent rect. 4 15
189 526.50 radiation 1 43200 < th dose dependent rect. 2 20
218 526.55 radiation 1 43200 < th dose dependent no NA NA
312 535.73 radiation 1 43200 > th dose independent rect. 17 2
323 535.96 radiation 1 43200 < th dose dependent rect. 2 4
324 536.07 radiation 1 43200 < th dose dependent rect. 4 2
329 536.26 radiation 1 43200 < th dose dependent rect. 21 9
336 536.86 radiation 1 43200 < th dose dependent rect. 2 13
339 536.90 radiation 1 43200 < th dose dependent rect. 4 11
353 537.02 radiation 1 43200 < th dose dependent rect. 21 18
367 537.36 temperature 20 43200 < th dose dependent rect. 2 1
382 537.75 radiation 1 43200 < th dose independent rect. 7 12
384 537.76 radiation 1 43200 < th dose independent rect. 7 20
387 537.79 radiation 1 43200 < th dose independent rect. 7 18
391 537.82 radiation 1 43200 < th dose independent rect. 17 2
398 537.84 radiation 1 43200 < th dose independent rect. 17 10
406 537.92 radiation 1 43200 < th dose independent rect. 17 8
410 537.96 radiation 1 43200 < th dose independent rect. 17 5
460 539.02 radiation 1 43200 > th dose independent rect. 7 12
495 540.10 humidity 90 43200 > th dose dependent rect. 5 1
604 546.01 temperature 20 43200 < th dose dependent sin 9 NA
606 546.03 radiation 1 43200 < th dose independent sin 19 NA
717 548.42 radiation 1 43200 < th dose independent rect. 17 22
741 548.70 radiation 1 43200 > th dose independent sin 19 NA
745 548.80 radiation 1 43200 < th dose independent rect. 13 6
746 548.81 radiation 1 43200 < th dose independent rect. 13 14
758 548.86 radiation 1 43200 < th dose independent rect. 13 12
765 548.89 radiation 1 43200 < th dose independent rect. 13 9
780 549.15 humidity 90 43200 > th dose dependent rect. 4 3
790 549.50 radiation 1 43200 > th dose independent rect. 17 22
890 551.02 temperature 20 43200 < th dose independent rect. 22 1
934 551.81 temperature 20 43200 < th dose independent rect. 6 2
943 552.04 temperature 20 43200 > th dose independent rect. 22 1
945 552.08 temperature 20 43200 > th dose independent rect. 6 2
958 552.20 radiation 1 43200 < th dose independent rect. 17 18
973 552.28 humidity 90 43200 > th dose dependent rect. 21 21
974 552.31 radiation 1 43200 > th dose independent rect. 17 18
975 552.31 humidity 90 43200 > th dose dependent rect. 21 17
978 552.36 radiation 1 43200 > th dose independent rect. 13 6