Os04g0173300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0173300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.16 | 0.336 | 8.45 | 0.0632 | 0.913 | 0.99 | 0.604 | 0.317 | 0.278 | 22.6 | 21.34 | 1863 | -- | -- |
| 51.33 | 0.334 | 8.46 | -0.00972 | 0.915 | 0.952 | 0.626 | -- | 0.257 | 22.6 | 21.47 | 1860 | -- | -- |
| 52.59 | 0.338 | 8.45 | 0.0638 | 0.901 | 0.976 | -- | 0.371 | 0.273 | 22.7 | 21.5 | 1920 | -- | -- |
| 52.93 | 0.339 | 8.46 | -0.0345 | 0.908 | 0.95 | -- | -- | 0.255 | 22.7 | 21.5 | 1867 | -- | -- |
| 98.99 | 0.463 | 8.43 | 0.124 | -- | 1.05 | -- | 0.644 | 0.303 | -- | 21.58 | 2224 | -- | -- |
| 77.61 | 0.413 | 8.4 | 0.419 | 0.943 | -- | 0.611 | -- | 0.536 | 22.5 | -- | -- | -- | -- |
| 79.13 | 0.417 | 8.4 | 0.394 | 0.939 | -- | -- | -- | 0.534 | 22.6 | -- | -- | -- | -- |
| 92.19 | 0.447 | 8.45 | 0.0874 | -- | 0.97 | -- | -- | 0.238 | -- | 22 | 820 | -- | -- |
| 52.96 | 0.339 | 8.46 | -- | 0.907 | 0.938 | -- | -- | 0.261 | 22.7 | 21.48 | 1875 | -- | -- |
| 133.32 | 0.54 | 8.37 | 0.411 | -- | -- | -- | -- | 0.538 | -- | -- | -- | -- | -- |
| 83.22 | 0.427 | 8.41 | -- | 0.941 | -- | -- | -- | 0.49 | 22.6 | -- | -- | -- | -- |
| 92.21 | 0.447 | 8.44 | -- | -- | 1.01 | -- | -- | 0.22 | -- | 21.84 | 812 | -- | -- |
| 137.77 | 0.548 | 8.38 | -- | -- | -- | -- | -- | 0.493 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 2 | 52.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 38 | 54.07 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 45 | 54.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 52 | 54.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 61 | 54.63 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 69 | 54.71 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 83 | 54.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 91 | 54.82 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 115 | 54.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 136 | 54.96 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 168 | 55.04 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 174 | 55.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 183 | 55.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 18 |
| 263 | 55.22 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 274 | 55.24 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 295 | 55.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 317 | 55.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 327 | 55.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 348 | 55.34 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 512 | 55.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 615 | 55.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 732 | 55.87 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 793 | 55.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 803 | 55.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 834 | 55.98 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 847 | 56.00 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 911 | 56.12 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 915 | 56.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |