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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0172600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, putative npRNA.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.84 (0.0359) R2 : 0.00245
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0801 (0.0757) R2dN8 : 0.00317 R2N8 : 0.00245
σ : 0.677
deviance : 210.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.97 0.664 2.82 0.394 0.282 -0.628 0.395 -0.0896 0.199 19.8 22.8 463 -- --
199.97 0.659 2.82 0.41 0.284 -0.634 0.381 -- 0.203 19.8 22.8 461 -- --
200.36 0.659 2.81 0.408 0.276 -0.632 -- 0.118 0.204 19.8 22.8 458 -- --
200.38 0.659 2.82 0.398 0.278 -0.621 -- -- 0.204 19.7 22.76 458 -- --
202.93 0.663 2.81 0.323 -- -0.443 -- -0.178 0.189 -- 21.98 269 -- --
207.41 0.675 2.83 0.272 0.109 -- 0.207 -- 0.109 0.184 -- -- -- --
207.59 0.675 2.83 0.264 0.108 -- -- -- 0.108 0.438 -- -- -- --
202.95 0.664 2.81 0.355 -- -0.443 -- -- 0.176 -- 22 287 -- --
204.27 0.666 2.83 -- 0.228 -0.515 -- -- 0.146 19.7 22.79 409 -- --
208.32 0.674 2.83 0.267 -- -- -- -- 0.11 -- -- -- -- --
209.42 0.677 2.84 -- 0.112 -- -- -- 0.0787 0.557 -- -- -- --
206.17 0.669 2.82 -- -- -0.376 -- -- 0.128 -- 22.2 287 -- --
210.21 0.677 2.84 -- -- -- -- -- 0.0801 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.11 temperature 25.0 90 < th dose dependent rect. 12 1
2 192.97 temperature 25.0 10 < th dose independent rect. 13 1
13 193.63 wind 5.0 90 > th dose independent rect. 13 1
14 194.12 wind 5.0 90 > th dose dependent rect. 13 1
22 195.72 temperature 20.0 720 > th dose dependent rect. 11 1
24 195.90 temperature 15.0 30 > th dose dependent rect. 11 12
25 195.95 wind 5.0 10 > th dose independent rect. 13 1
29 196.07 temperature 25.0 30 < th dose independent rect. 13 15
32 196.17 temperature 30.0 10 < th dose dependent rect. 13 1
34 196.26 wind 5.0 4320 < th dose independent rect. 11 2
41 196.39 wind 5.0 10 > th dose independent rect. 21 1
43 196.39 wind 5.0 10 > th dose dependent rect. 21 1
45 196.41 wind 5.0 4320 > th dose independent rect. 10 3
51 196.50 humidity 80.0 10 < th dose dependent rect. 21 1
66 196.77 atmosphere 1005.0 10 < th dose independent rect. 20 1
69 196.83 temperature 15.0 30 > th dose dependent rect. 11 21
86 197.03 humidity 80.0 10 < th dose independent rect. 21 1
91 197.05 temperature 25.0 720 < th dose dependent rect. 11 2
105 197.26 temperature 25.0 720 > th dose independent rect. 11 1
110 197.32 atmosphere 1005.0 10 < th dose independent rect. 18 3
144 197.83 atmosphere 1005.0 30 > th dose dependent rect. 13 1
153 197.93 wind 5.0 10 > th dose dependent rect. 13 1
157 198.04 wind 1.0 720 > th dose dependent rect. 12 1
159 198.06 temperature 25.0 90 < th dose independent rect. 12 11
160 198.07 temperature 30.0 90 < th dose dependent rect. 12 11
162 198.09 temperature 25.0 30 > th dose independent rect. 11 20
163 198.11 atmosphere 1005.0 30 > th dose independent rect. 8 3
171 198.14 temperature 30.0 30 < th dose dependent rect. 13 15
173 198.18 temperature 25.0 90 < th dose independent rect. 12 7
175 198.22 radiation 40.0 30 > th dose independent rect. 13 22
182 198.26 temperature 20.0 30 > th dose dependent rect. 11 15
185 198.33 radiation 30.0 720 < th dose independent rect. 15 9
188 198.37 precipitation 0.1 43200 > th dose dependent rect. 20 3
189 198.38 wind 5.0 720 > th dose independent rect. 12 2
191 198.39 temperature 25.0 90 > th dose independent rect. 11 11
196 198.45 temperature 10.0 720 > th dose dependent rect. 10 6
198 198.47 temperature 25.0 270 < th dose independent rect. 12 9
215 198.60 wind 3.0 10 < th dose independent rect. 8 3
232 198.70 wind 3.0 4320 > th dose dependent rect. 9 4
235 198.73 temperature 25.0 10 > th dose independent rect. 7 2
243 198.77 radiation 30.0 90 > th dose independent rect. 8 1
246 198.78 wind 5.0 4320 < th dose independent rect. 20 18
249 198.80 radiation 40.0 30 > th dose independent sin 12 NA
250 198.80 temperature 25.0 10 < th dose independent rect. 13 11
251 198.80 radiation 1.0 43200 < th dose dependent rect. 19 6
265 198.87 precipitation 0.1 43200 < th dose independent rect. 20 1
267 198.87 precipitation 0.1 43200 < th dose dependent rect. 20 1
269 198.88 precipitation 0.1 43200 > th dose independent rect. 20 2
289 198.89 atmosphere 1000.0 30 > th dose dependent rect. 8 3
293 198.90 wind 5.0 4320 > th dose independent rect. 20 18
303 198.95 wind 7.0 1440 > th dose independent rect. 23 10
319 199.01 wind 7.0 1440 < th dose independent rect. 23 10
323 199.01 radiation 1.0 43200 < th dose dependent rect. 19 9
337 199.05 wind 9.0 4320 < th dose dependent rect. 12 1
353 199.10 wind 5.0 720 < th dose independent rect. 11 1
360 199.11 radiation 10.0 10 > th dose dependent rect. 10 1
365 199.13 radiation 40.0 30 < th dose independent sin 12 NA
371 199.13 radiation 40.0 720 < th dose dependent rect. 15 9
375 199.15 temperature 30.0 10 < th dose dependent rect. 13 11
388 199.19 wind 5.0 1440 > th dose dependent rect. 24 10
402 199.25 radiation 20.0 90 > th dose dependent rect. 8 1
405 199.26 atmosphere 995.0 43200 > th dose independent rect. 18 3
418 199.28 precipitation 0.1 4320 > th dose independent rect. 20 7
419 199.28 atmosphere 1000.0 10 > th dose independent rect. 13 15
425 199.29 precipitation 0.1 4320 < th dose independent rect. 20 7
427 199.29 precipitation 0.1 4320 < th dose dependent rect. 20 7
453 199.36 wind 7.0 720 < th dose dependent rect. 11 1
455 199.37 wind 5.0 4320 < th dose independent rect. 23 15
457 199.37 temperature 30.0 270 < th dose dependent rect. 12 9
465 199.41 atmosphere 995.0 43200 > th dose independent rect. 16 1
478 199.43 atmosphere 995.0 43200 < th dose independent rect. 16 1
492 199.43 atmosphere 995.0 43200 < th dose dependent rect. 16 1
498 199.43 wind 5.0 30 < th dose dependent rect. 8 3
508 199.44 wind 5.0 4320 > th dose independent rect. 23 15
542 199.52 temperature 15.0 30 > th dose dependent rect. 4 19
579 199.58 radiation 10.0 30 > th dose dependent rect. 13 22
582 199.60 wind 5.0 4320 < th dose independent rect. 24 1
586 199.60 wind 9.0 43200 > th dose dependent rect. 20 1
596 199.61 atmosphere 995.0 30 > th dose dependent rect. 13 22
603 199.63 atmosphere 1000.0 30 > th dose independent rect. 13 1
609 199.63 wind 9.0 4320 < th dose dependent rect. 10 3
643 199.67 temperature 25.0 720 > th dose independent rect. 10 5
647 199.67 temperature 10.0 270 > th dose dependent rect. 8 22
648 199.68 wind 5.0 4320 > th dose independent rect. 24 1
669 199.69 wind 7.0 4320 > th dose independent rect. 23 3
671 199.69 atmosphere 1005.0 90 > th dose dependent rect. 12 10
677 199.70 temperature 25.0 90 > th dose independent rect. 11 14
687 199.72 atmosphere 1005.0 43200 < th dose dependent rect. 22 1
689 199.72 atmosphere 1005.0 43200 < th dose dependent rect. 22 3
695 199.73 wind 5.0 720 < th dose independent rect. 24 13
697 199.73 atmosphere 1005.0 43200 < th dose dependent rect. 24 1
705 199.74 temperature 30.0 30 < th dose dependent rect. 13 22
706 199.75 radiation 1.0 14400 > th dose independent rect. 16 1
708 199.75 radiation 30.0 720 < th dose independent rect. 13 11
711 199.76 wind 5.0 4320 > th dose dependent rect. 24 1
721 199.78 wind 5.0 720 < th dose independent rect. 24 15
723 199.78 radiation 1.0 43200 < th dose dependent rect. 1 1
739 199.81 wind 3.0 1440 < th dose dependent rect. 11 2
751 199.83 wind 9.0 43200 < th dose independent rect. 20 1
755 199.84 radiation 1.0 14400 < th dose independent rect. 16 1
765 199.84 wind 7.0 1440 < th dose dependent rect. 24 14
781 199.87 wind 1.0 1440 > th dose dependent rect. 24 14
784 199.88 radiation 1.0 43200 < th dose dependent rect. 22 4
790 199.89 temperature 25.0 720 > th dose independent rect. 24 21
794 199.90 wind 9.0 43200 > th dose independent rect. 20 1
805 199.91 precipitation 0.1 4320 > th dose dependent rect. 21 6
811 199.92 atmosphere 995.0 43200 < th dose independent rect. 15 7
829 199.94 humidity 80.0 10 < th dose independent rect. 21 14
841 199.95 atmosphere 1000.0 43200 > th dose independent rect. 12 1
845 199.96 atmosphere 1000.0 43200 < th dose independent rect. 12 1
849 199.96 atmosphere 1015.0 4320 < th dose independent rect. 16 4
852 199.96 radiation 1.0 43200 < th dose dependent rect. 23 1
894 199.99 temperature 25.0 720 < th dose independent rect. 2 18
923 200.01 atmosphere 1000.0 43200 > th dose independent rect. 12 15
924 200.01 atmosphere 1000.0 43200 < th dose independent rect. 11 15
944 200.02 atmosphere 1000.0 43200 > th dose independent rect. 2 1
945 200.02 atmosphere 1000.0 43200 < th dose independent rect. 2 1
950 200.02 atmosphere 1000.0 43200 < th dose independent rect. 18 7
953 200.02 atmosphere 1000.0 43200 < th dose independent rect. 12 13
983 200.02 atmosphere 1000.0 43200 < th dose dependent rect. 14 13
989 200.03 atmosphere 1000.0 43200 > th dose independent sin 16 NA
991 200.03 atmosphere 1000.0 43200 < th dose independent sin 15 NA
997 200.03 atmosphere 1000.0 43200 > th dose independent rect. 12 5