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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0172400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transferase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.44 (0.0315) R2 : 0.323
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.645 (0.082) R2dC : 0.0929 R2C : 0.0972
β3 : 0.885 (0.0995) R2dE : 0.128 R2E : 0.168
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.356 (0.0685) R2dN8 : 0.0549 R2N8 : 0.0873
σ : 0.586
deviance : 158.32
__
_____
C
peak time of C : 6.17
E
wheather : temperature
threshold : 20.08
memory length : 1412
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
154.24 0.584 3.52 -0.562 0.654 0.987 -0.284 -2.6 0.216 6.24 23.6 1429 -- --
157.48 0.584 3.43 0.184 0.644 0.819 -0.177 -- 0.378 6.22 21.02 1396 -- --
154.42 0.579 3.52 -0.559 0.653 0.98 -- -2.57 0.216 6.16 23.51 1429 -- --
157.61 0.585 3.44 0.173 0.641 0.829 -- -- 0.38 6.18 20.41 1403 -- --
175.92 0.618 3.53 -0.523 -- 1.03 -- -2.5 0.233 -- 23.56 1378 -- --
179.56 0.628 3.39 0.482 0.689 -- -0.178 -- 0.575 5.9 -- -- -- --
179.63 0.628 3.39 0.481 0.688 -- -- -- 0.575 5.85 -- -- -- --
178.74 0.623 3.45 0.175 -- 0.888 -- -- 0.382 -- 20.4 1355 -- --
158.32 0.586 3.44 -- 0.645 0.885 -- -- 0.356 6.17 20.08 1412 -- --
204.14 0.668 3.4 0.501 -- -- -- -- 0.591 -- -- -- -- --
185.72 0.637 3.4 -- 0.695 -- -- -- 0.522 5.82 -- -- -- --
179.43 0.624 3.46 -- -- 0.956 -- -- 0.351 -- 19.9 1351 -- --
210.77 0.678 3.42 -- -- -- -- -- 0.536 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.77 temperature 25 1440 < th dose independent rect. 21 1
2 148.14 temperature 25 1440 > th dose independent rect. 21 1
3 148.74 temperature 20 720 > th dose dependent rect. 19 14
11 149.46 temperature 25 1440 > th dose dependent rect. 18 2
14 149.68 temperature 25 1440 > th dose dependent rect. 17 14
16 149.73 temperature 20 270 > th dose dependent rect. 1 8
21 149.90 temperature 25 1440 < th dose independent rect. 19 5
30 150.05 radiation 40 43200 < th dose independent rect. 10 1
31 150.07 temperature 25 1440 > th dose dependent rect. 17 8
44 150.26 temperature 20 720 > th dose dependent sin 9 NA
69 150.69 radiation 40 43200 > th dose dependent rect. 10 1
73 150.75 radiation 40 43200 > th dose independent rect. 10 1
78 150.90 temperature 25 4320 > th dose independent rect. 6 1
92 151.14 temperature 25 4320 < th dose independent rect. 6 1
102 151.22 temperature 25 1440 > th dose dependent sin 13 NA
120 151.49 temperature 30 1440 < th dose independent rect. 14 2
123 151.51 wind 7 43200 > th dose dependent rect. 9 12
125 151.53 wind 1 43200 < th dose dependent rect. 8 1
131 151.69 wind 9 43200 > th dose dependent rect. 13 18
132 151.74 temperature 25 1440 < th dose independent rect. 17 14
138 151.88 wind 7 43200 > th dose dependent rect. 9 10
143 151.92 wind 7 43200 > th dose dependent sin 21 NA
145 151.95 temperature 30 1440 > th dose independent rect. 14 2
164 152.10 wind 5 43200 > th dose dependent rect. 13 3
167 152.11 radiation 40 43200 < th dose independent rect. 5 6
168 152.11 radiation 40 43200 < th dose independent rect. 16 19
172 152.12 radiation 40 43200 < th dose independent rect. 18 17
180 152.13 radiation 40 43200 < th dose independent rect. 22 13
186 152.15 wind 7 43200 > th dose dependent rect. 9 8
187 152.16 temperature 25 1440 > th dose independent rect. 17 14
193 152.18 wind 7 43200 > th dose dependent rect. 5 16
194 152.19 wind 9 43200 < th dose independent rect. 13 19
195 152.19 wind 5 43200 > th dose dependent rect. 14 1
199 152.22 wind 9 43200 < th dose independent rect. 8 13
204 152.24 wind 9 43200 > th dose dependent rect. 13 15
205 152.25 wind 9 43200 > th dose independent rect. 13 19
207 152.27 wind 9 43200 > th dose independent rect. 9 12
208 152.27 radiation 40 43200 > th dose dependent rect. 7 4
231 152.36 temperature 15 30 > th dose dependent rect. 4 18
279 152.53 temperature 20 720 > th dose dependent rect. 4 1
297 152.58 wind 7 43200 < th dose independent rect. 5 12
310 152.63 wind 7 43200 > th dose independent rect. 5 12
311 152.63 temperature 15 30 > th dose dependent rect. 4 16
320 152.67 wind 9 43200 < th dose independent rect. 5 16
327 152.68 wind 9 43200 > th dose dependent rect. 13 12
360 152.81 wind 9 43200 > th dose dependent sin 16 NA
365 152.83 wind 7 43200 > th dose independent rect. 5 16
371 152.85 wind 9 43200 < th dose independent sin 22 NA
372 152.85 wind 9 43200 < th dose independent rect. 9 6
398 152.91 wind 9 43200 < th dose independent rect. 24 21
408 152.94 wind 9 43200 > th dose independent sin 21 NA
426 152.98 radiation 20 43200 < th dose independent rect. 17 16
429 153.00 radiation 20 43200 < th dose independent rect. 7 2
441 153.01 radiation 20 43200 < th dose independent rect. 20 13
466 153.05 humidity 80 43200 < th dose independent rect. 21 1
469 153.06 temperature 25 1440 < th dose independent sin 13 NA
488 153.09 wind 9 43200 < th dose independent rect. 18 21
500 153.11 wind 9 43200 > th dose independent rect. 9 19
519 153.15 wind 9 43200 > th dose independent rect. 9 16
553 153.18 wind 7 43200 > th dose dependent rect. 11 22
567 153.21 wind 7 43200 < th dose independent rect. 13 3
577 153.22 wind 9 43200 > th dose independent rect. 11 22
606 153.27 radiation 40 43200 > th dose dependent sin 10 NA
607 153.27 humidity 80 43200 < th dose dependent rect. 21 1
629 153.29 wind 9 43200 > th dose independent rect. 9 6
633 153.30 radiation 40 43200 < th dose independent sin 10 NA
740 153.42 temperature 25 1440 > th dose independent sin 14 NA
752 153.43 wind 9 43200 < th dose independent rect. 9 18
764 153.45 wind 9 43200 > th dose independent rect. 18 21
802 153.51 wind 7 43200 > th dose independent rect. 13 3
955 153.71 radiation 40 43200 > th dose independent rect. 7 4