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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0171600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 79A1 (EC 1.14.13.41) (Tyrosine N-monooxygenase) (Cytochrome P450Tyr).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.5 (0.05) R2 : 0.679
β1 : 4.41 (0.25) R2dD : 0.453 R2D : 0.0623
β2 : -- (--) R2dC : -- R2C : --
β3 : -5.64 (0.245) R2dE : 0.653 R2E : -0.02
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -14.6 (0.849) R2dD*E : 0.639 R2D*E : -0.718
γ1 : -1.37 (0.112) R2dN8 : 0.175 R2N8 : 0.0975
σ : 0.873
deviance : 351.4
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.056
memory length : 10251
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
345.85 0.874 4.51 4.35 0.559 -5.55 2.4 -14.3 -1.42 13.7 1.05 10065 -- --
667.38 1.2 4.77 3.95 0.365 -5.39 2.3 -- -1.65 13.5 6.411 10411 -- --
350.9 0.872 4.5 4.36 0.366 -5.68 -- -14.3 -1.35 1.57 1.14 10315 -- --
592.62 1.13 4.72 3.2 0.0748 -3.55 -- -- -1.6 12.5 6.01 10434 -- --
351.4 0.873 4.5 4.41 -- -5.64 -- -14.6 -1.37 -- 1.056 10251 -- --
824.05 1.35 4.58 2.15 0.318 -- 1.97 -- -0.988 13.7 -- -- -- --
839.26 1.36 4.57 2.22 0.319 -- -- -- -0.977 13.1 -- -- -- --
525.35 1.07 4.65 2.24 -- -3.17 -- -- -1.77 -- 2.86 10239 -- --
686.53 1.22 4.86 -- 0.17 -3.3 -- -- -1.48 0.403 10.01 3011 -- --
845.59 1.36 4.58 2.2 -- -- -- -- -0.984 -- -- -- -- --
968.58 1.46 4.63 -- 0.283 -- -- -- -1.22 12.8 -- -- -- --
438.46 0.975 4.87 -- -- -3.84 -- -- -2.15 -- 1.19 39230 -- --
973.6 1.46 4.63 -- -- -- -- -- -1.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.41 temperature 20 43200 > th dose independent sin 17 NA
2 301.49 temperature 20 43200 > th dose independent rect. 12 14
3 301.51 temperature 20 43200 > th dose independent rect. 15 10
4 301.57 temperature 20 43200 > th dose independent rect. 14 12
44 302.95 temperature 20 43200 > th dose independent rect. 19 5
48 303.07 temperature 20 43200 < th dose independent rect. 12 14
50 303.09 temperature 20 43200 < th dose independent rect. 15 11
59 303.20 temperature 20 43200 < th dose independent sin 16 NA
240 305.93 temperature 20 43200 > th dose independent no NA NA
241 305.93 temperature 20 43200 > th dose independent rect. 18 23
277 306.21 temperature 20 43200 > th dose independent rect. 23 23
324 306.65 temperature 20 43200 < th dose independent no NA NA
326 306.67 temperature 20 43200 < th dose independent rect. 18 23
333 306.71 temperature 25 43200 < th dose dependent rect. 17 1
353 306.82 temperature 20 43200 < th dose independent rect. 1 23
354 306.83 temperature 25 43200 > th dose independent rect. 17 1
357 306.84 temperature 20 43200 < th dose independent rect. 23 23
436 307.54 temperature 25 43200 < th dose independent rect. 17 2
445 307.76 temperature 20 43200 > th dose independent rect. 23 1
556 309.64 temperature 20 43200 < th dose independent rect. 23 1
558 309.66 temperature 25 43200 < th dose dependent rect. 11 9
779 313.14 temperature 25 43200 < th dose dependent sin 20 NA
805 313.64 temperature 20 43200 > th dose dependent rect. 17 1
821 313.81 temperature 25 43200 < th dose dependent rect. 11 4
853 314.27 temperature 25 43200 < th dose dependent rect. 13 1
900 314.83 temperature 20 43200 > th dose independent rect. 1 1