Os04g0168400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0168400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 141.02 | 0.558 | 4.26 | 1.18 | 0.799 | 2.17 | -0.577 | -0.173 | -0.105 | 11.8 | 25 | 740 | -- | -- |
| 141.05 | 0.553 | 4.26 | 1.15 | 0.797 | 2.19 | -0.609 | -- | -0.108 | 11.8 | 25 | 740 | -- | -- |
| 142.19 | 0.555 | 4.25 | 1.22 | 0.796 | 2.14 | -- | -0.535 | -0.0963 | 11.5 | 25 | 778 | -- | -- |
| 142.6 | 0.556 | 4.26 | 1.13 | 0.796 | 2.2 | -- | -- | -0.11 | 11.5 | 24.9 | 771 | -- | -- |
| 174.04 | 0.614 | 4.24 | 1.36 | -- | 2.58 | -- | -0.564 | 0.0249 | -- | 26.81 | 829 | -- | -- |
| 211.74 | 0.682 | 4.35 | 0.533 | 1.1 | -- | -0.648 | -- | -0.568 | 11.3 | -- | -- | -- | -- |
| 213.5 | 0.684 | 4.36 | 0.505 | 1.1 | -- | -- | -- | -0.571 | 11.2 | -- | -- | -- | -- |
| 174.69 | 0.616 | 4.25 | 1.24 | -- | 2.63 | -- | -- | 0.00759 | -- | 26.67 | 832 | -- | -- |
| 171.65 | 0.61 | 4.31 | -- | 0.863 | 1.7 | -- | -- | -0.328 | 11.5 | 24.95 | 717 | -- | -- |
| 289.06 | 0.794 | 4.38 | 0.479 | -- | -- | -- | -- | -0.581 | -- | -- | -- | -- | -- |
| 220.24 | 0.694 | 4.37 | -- | 1.09 | -- | -- | -- | -0.627 | 11.2 | -- | -- | -- | -- |
| 210.58 | 0.676 | 4.3 | -- | -- | 2.12 | -- | -- | -0.229 | -- | 26.61 | 806 | -- | -- |
| 295.11 | 0.802 | 4.39 | -- | -- | -- | -- | -- | -0.634 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 137.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 5 | 138.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 18 |
| 9 | 138.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 10 | 139.14 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 11 | 139.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 21 |
| 16 | 139.38 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 17 | 139.41 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 22 |
| 41 | 139.99 | temperature | 30 | 720 | < th | dose dependent | sin | 8 | NA |
| 61 | 140.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 91 | 141.05 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 125 | 141.59 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 126 | 141.60 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 155 | 142.24 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 243 | 143.62 | temperature | 15 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 369 | 145.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 10 |
| 408 | 145.90 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 436 | 146.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 448 | 146.34 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 471 | 146.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 483 | 146.60 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 505 | 146.76 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 536 | 147.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 538 | 147.04 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 559 | 147.20 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 5 |
| 630 | 147.64 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 654 | 147.73 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 900 | 148.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 4 |
| 933 | 148.73 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |