Os04g0168300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0168300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 692.66 | 1.24 | 4.54 | 2.32 | 0.539 | -0.973 | 0.196 | -3.75 | 0.292 | 4.85 | 1005 | 30 | 23.1 | -- |
| 727.63 | 1.27 | 4.53 | 2.49 | 0.538 | -1.05 | -2.29 | -- | 0.363 | 6.08 | 1005 | 30 | 23.1 | -- |
| 692.62 | 1.23 | 4.54 | 2.32 | 0.529 | -0.955 | -- | -3.65 | 0.28 | 4.8 | 1005 | 36 | 23.1 | -- |
| 732.21 | 1.26 | 4.52 | 2.44 | 0.438 | -1.13 | -- | -- | 0.372 | 9.49 | 1005 | 30 | 20.5 | -- |
| 700.89 | 1.23 | 4.57 | 2.31 | -- | -0.764 | -- | -3.35 | 0.242 | -- | 1005 | 62 | 22.7 | -- |
| 755.15 | 1.29 | 4.59 | 2.5 | 0.424 | -- | 2.41 | -- | 0.192 | 19.8 | -- | -- | -- | -- |
| 770.08 | 1.3 | 4.59 | 2.43 | 0.443 | -- | -- | -- | 0.191 | 21.2 | -- | -- | -- | -- |
| 736.94 | 1.26 | 4.55 | 2.4 | -- | -0.834 | -- | -- | 0.31 | -- | 1005 | 30 | 20.5 | -- |
| 892.35 | 1.39 | 4.51 | -- | 0.464 | -1.15 | -- | -- | 0.224 | 10.4 | 1005 | 30 | 19.9 | -- |
| 781.48 | 1.31 | 4.58 | 2.43 | -- | -- | -- | -- | 0.189 | -- | -- | -- | -- | -- |
| 925.8 | 1.42 | 4.65 | -- | 0.445 | -- | -- | -- | -0.0793 | 21.6 | -- | -- | -- | -- |
| 893.87 | 1.39 | 4.61 | -- | -- | -0.816 | -- | -- | 0.0562 | -- | 1005 | 30 | 20.1 | -- |
| 937.55 | 1.43 | 4.64 | -- | -- | -- | -- | -- | -0.0806 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 698.35 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 11 |
| 2 | 698.96 | atmosphere | 1005.0 | 30 | > th | dose independent | sin | 5 | NA |
| 3 | 699.26 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 13 |
| 7 | 700.30 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 2 | 13 |
| 30 | 702.53 | atmosphere | 1005.0 | 30 | < th | dose independent | rect. | 24 | 15 |
| 42 | 703.48 | atmosphere | 1005.0 | 10 | < th | dose independent | sin | 5 | NA |
| 43 | 703.53 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 15 |
| 58 | 704.90 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 24 | 15 |
| 63 | 705.52 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 77 | 706.22 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 10 |
| 94 | 706.87 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 16 |
| 105 | 707.61 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 16 | 12 |
| 106 | 707.69 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 115 | 708.15 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 2 |
| 134 | 708.81 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 16 | 5 |
| 135 | 708.97 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 137 | 709.07 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 142 | 709.19 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 145 | 709.22 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 148 | 709.22 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 5 |
| 167 | 709.48 | radiation | 40.0 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 186 | 709.64 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 12 | 6 |
| 249 | 711.45 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 12 | 6 |
| 250 | 711.48 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 16 |
| 256 | 711.62 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 282 | 712.03 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 292 | 712.16 | precipitation | 0.1 | 1440 | > th | dose dependent | sin | 16 | NA |
| 293 | 712.17 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 304 | 712.33 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 17 |
| 310 | 712.46 | humidity | 90.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 322 | 712.76 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 331 | 712.88 | wind | 3.0 | 270 | < th | dose dependent | rect. | 5 | 13 |
| 387 | 713.73 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 23 | 11 |
| 429 | 714.17 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 23 | 5 |
| 451 | 714.42 | wind | 3.0 | 90 | < th | dose independent | rect. | 7 | 13 |
| 454 | 714.43 | radiation | 40.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 473 | 714.78 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 1 | 3 |
| 481 | 714.86 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 523 | 715.37 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 2 | 5 |
| 555 | 715.70 | atmosphere | 1005.0 | 720 | < th | dose independent | rect. | 3 | 1 |
| 606 | 716.18 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 608 | 716.18 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 617 | 716.26 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 24 | 19 |
| 635 | 716.38 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 638 | 716.40 | wind | 3.0 | 270 | < th | dose independent | rect. | 5 | 14 |
| 671 | 716.75 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 19 | 9 |
| 690 | 716.83 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 18 | 10 |
| 691 | 716.83 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 702 | 716.91 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 16 | 12 |
| 747 | 717.21 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 5 | 6 |
| 753 | 717.26 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 20 | NA |
| 770 | 717.37 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 2 | 11 |
| 778 | 717.41 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 20 | NA |
| 781 | 717.42 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 818 | 717.67 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 19 | 9 |
| 838 | 717.80 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 869 | 718.01 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 2 | 6 |
| 871 | 718.02 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 912 | 718.33 | wind | 7.0 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 914 | 718.33 | wind | 5.0 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 927 | 718.43 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 8 | 17 |
| 930 | 718.45 | wind | 7.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 943 | 718.55 | atmosphere | 1010.0 | 270 | < th | dose dependent | rect. | 23 | 12 |
| 946 | 718.56 | radiation | 40.0 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 973 | 718.71 | wind | 7.0 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 990 | 718.77 | atmosphere | 1010.0 | 10 | < th | dose dependent | sin | 4 | NA |
| 991 | 718.78 | wind | 7.0 | 14400 | < th | dose independent | rect. | 5 | 8 |