FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0168100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0183) R2 : 0.00338
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0479 (0.0385) R2dN8 : 0.00437 R2N8 : 0.00338
σ : 0.345
deviance : 54.54
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
51.12 0.336 3.01 -0.0588 0.125 0.152 -0.00402 -0.231 -0.141 9.9 1006 15 -- --
51.38 0.334 3.01 -0.0607 0.123 0.149 -0.0192 -- -0.132 10.1 1006 25 -- --
51.04 0.333 3.01 -0.0586 0.124 0.155 -- -0.234 -0.143 9.88 1006 25 -- --
51.38 0.334 3.01 -0.0586 0.121 0.15 -- -- -0.133 10 1006 25 -- --
51.96 0.338 3.01 -0.0607 -- 0.161 -- -0.224 -0.146 -- 1006 25 -- --
53.3 0.342 2.99 -0.0687 0.138 -- 0.063 -- -0.056 9.31 -- -- -- --
53.31 0.342 2.99 -0.0661 0.138 -- -- -- -0.0557 9.52 -- -- -- --
52.26 0.337 3.01 -0.0601 -- 0.158 -- -- -0.138 -- 1006 25 -- --
51.47 0.334 3.01 -- 0.123 0.152 -- -- -0.132 10.1 1006 28 -- --
54.42 0.345 3 -0.0671 -- -- -- -- -0.0554 -- -- -- -- --
53.43 0.342 2.99 -- 0.138 -- -- -- -0.0484 9.56 -- -- -- --
52.36 0.337 3.01 -- -- 0.157 -- -- -0.135 -- 1006 25 -- --
54.54 0.345 2.99 -- -- -- -- -- -0.0479 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.92 atmosphere 1000.0 10 < th dose independent rect. 5 1
9 44.92 atmosphere 1000.0 10 < th dose dependent rect. 5 1
72 49.22 wind 1.0 30 < th dose dependent rect. 5 1
85 49.34 atmosphere 1000.0 10 < th dose independent rect. 2 5
104 49.55 wind 1.0 90 < th dose independent rect. 5 1
146 50.18 wind 1.0 1440 < th dose independent rect. 17 6
147 50.19 atmosphere 1005.0 10 > th dose independent rect. 11 1
156 50.38 wind 1.0 1440 > th dose independent rect. 17 6
170 50.48 wind 1.0 1440 < th dose dependent rect. 17 4
172 50.50 wind 1.0 1440 < th dose independent rect. 17 4
186 50.57 wind 1.0 1440 < th dose dependent rect. 17 6
192 50.62 wind 1.0 1440 > th dose independent rect. 17 4
220 50.85 wind 1.0 1440 < th dose dependent rect. 15 8
226 50.89 atmosphere 1005.0 10 > th dose independent rect. 11 10
242 50.97 wind 1.0 4320 > th dose independent rect. 17 1
250 51.02 wind 1.0 270 < th dose independent rect. 2 4
256 51.05 humidity 70.0 14400 > th dose dependent rect. 2 6
257 51.06 wind 1.0 1440 < th dose dependent rect. 17 2
261 51.08 radiation 30.0 10 < th dose independent rect. 12 1
265 51.08 humidity 70.0 14400 > th dose dependent rect. 1 8
276 51.12 humidity 50.0 14400 > th dose dependent rect. 2 5
280 51.13 atmosphere 1000.0 10 > th dose dependent rect. 11 10
283 51.14 temperature 15.0 720 > th dose independent rect. 6 8
288 51.15 radiation 20.0 90 < th dose independent rect. 10 1
297 51.17 atmosphere 1000.0 10 > th dose dependent rect. 11 1
299 51.17 radiation 1.0 10 > th dose dependent rect. 5 1
322 51.19 atmosphere 1005.0 10 > th dose independent rect. 11 6
326 51.20 humidity 90.0 14400 < th dose independent rect. 3 4
330 51.21 wind 1.0 1440 < th dose independent rect. 17 2
355 51.24 wind 1.0 30 < th dose independent rect. 5 7
364 51.25 atmosphere 1005.0 30 > th dose independent rect. 5 16
365 51.25 humidity 70.0 90 > th dose dependent rect. 11 1
371 51.26 atmosphere 1005.0 10 > th dose independent rect. 11 15
395 51.29 atmosphere 1005.0 30 > th dose independent rect. 5 7
398 51.29 wind 1.0 270 < th dose dependent rect. 3 1
408 51.31 atmosphere 1005.0 10 > th dose independent sin 21 NA
437 51.34 temperature 20.0 90 > th dose independent rect. 5 1
440 51.34 atmosphere 1005.0 10 > th dose independent rect. 11 13
447 51.35 radiation 20.0 90 < th dose dependent rect. 10 1
449 51.35 humidity 50.0 14400 > th dose dependent rect. 4 2
456 51.36 humidity 80.0 14400 > th dose independent rect. 5 1
458 51.36 humidity 80.0 14400 < th dose independent rect. 23 3
467 51.37 humidity 80.0 14400 < th dose independent rect. 4 1
482 51.38 precipitation 0.1 43200 < th dose independent rect. 21 16
483 51.38 precipitation 0.1 43200 > th dose independent rect. 20 17
492 51.38 precipitation 0.1 43200 < th dose dependent rect. 21 16
511 51.39 humidity 90.0 14400 > th dose dependent rect. 18 3
515 51.39 precipitation 0.1 43200 > th dose dependent rect. 21 16
524 51.40 atmosphere 1015.0 720 < th dose independent rect. 2 16
527 51.40 humidity 90.0 14400 > th dose dependent rect. 19 1
550 51.41 humidity 80.0 14400 < th dose independent rect. 23 7
552 51.41 precipitation 0.1 720 < th dose independent rect. 2 16
563 51.41 precipitation 0.1 720 < th dose dependent rect. 2 16
578 51.42 humidity 80.0 14400 < th dose dependent rect. 23 3
594 51.43 humidity 80.0 30 > th dose independent rect. 11 1
621 51.44 radiation 30.0 4320 < th dose independent rect. 21 10
624 51.44 humidity 70.0 14400 > th dose dependent sin 8 NA
626 51.44 humidity 80.0 14400 < th dose dependent rect. 1 1
644 51.45 temperature 30.0 90 < th dose dependent rect. 11 1
650 51.45 humidity 80.0 14400 < th dose dependent rect. 1 3
701 51.47 atmosphere 1005.0 10 < th dose independent rect. 7 21
702 51.47 atmosphere 1005.0 90 < th dose independent rect. 6 22
740 51.48 atmosphere 1005.0 30 > th dose independent rect. 5 12
745 51.48 atmosphere 1005.0 90 > th dose independent rect. 4 22
749 51.48 precipitation 0.1 720 > th dose dependent rect. 5 2
758 51.48 humidity 50.0 14400 > th dose dependent rect. 19 12
768 51.48 atmosphere 1010.0 30 < th dose dependent rect. 7 22
808 51.50 humidity 80.0 14400 < th dose dependent rect. 5 1
838 51.51 temperature 15.0 720 > th dose independent rect. 2 16
847 51.51 humidity 70.0 14400 > th dose dependent rect. 7 2
862 51.51 temperature 10.0 30 > th dose dependent rect. 6 23
875 51.52 temperature 20.0 90 > th dose dependent rect. 5 1
913 51.53 atmosphere 1005.0 90 < th dose independent rect. 7 16
948 51.54 humidity 80.0 14400 > th dose independent rect. 24 1
989 51.55 precipitation 0.1 43200 < th dose independent sin 9 NA
991 51.55 humidity 90.0 14400 < th dose independent rect. 19 1