Os04g0166500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0166500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 382.05 | 0.918 | 4.17 | -0.0352 | 0.343 | 1.02 | 0.736 | 2.76 | -0.744 | 1.61 | 69 | 307 | -- | -- |
| 393.8 | 0.924 | 4.19 | -0.217 | 0.435 | 1.24 | -0.0861 | -- | -0.788 | 1.59 | 69 | 304 | -- | -- |
| 383.21 | 0.912 | 4.17 | -0.0737 | 0.342 | 1.1 | -- | 2.56 | -0.753 | 2.74 | 68.79 | 349 | -- | -- |
| 393.6 | 0.924 | 4.19 | -0.221 | 0.435 | 1.27 | -- | -- | -0.77 | 2.09 | 68 | 303 | -- | -- |
| 382.33 | 0.911 | 4.15 | -0.0963 | -- | 1.18 | -- | 2.61 | -0.689 | -- | 67 | 632 | -- | -- |
| 427.25 | 0.969 | 4.2 | -0.0336 | 0.466 | -- | 1.64 | -- | -0.778 | 18.4 | -- | -- | -- | -- |
| 433.94 | 0.976 | 4.2 | -0.0557 | 0.472 | -- | -- | -- | -0.773 | 18.5 | -- | -- | -- | -- |
| 387.73 | 0.917 | 4.15 | -0.197 | -- | 1.48 | -- | -- | -0.607 | -- | 64.56 | 613 | -- | -- |
| 394.66 | 0.925 | 4.19 | -- | 0.4 | 1.23 | -- | -- | -0.756 | 2.1 | 68.14 | 304 | -- | -- |
| 445.55 | 0.986 | 4.19 | -0.0676 | -- | -- | -- | -- | -0.783 | -- | -- | -- | -- | -- |
| 434.02 | 0.975 | 4.2 | -- | 0.473 | -- | -- | -- | -0.767 | 18.5 | -- | -- | -- | -- |
| 388.74 | 0.918 | 4.15 | -- | -- | 1.46 | -- | -- | -0.588 | -- | 64.62 | 613 | -- | -- |
| 445.67 | 0.985 | 4.19 | -- | -- | -- | -- | -- | -0.775 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 374.35 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 3 | 374.52 | temperature | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 4 | 374.66 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 5 | 374.75 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 8 | 375.03 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 18 | 375.84 | humidity | 70 | 720 | < th | dose independent | rect. | 10 | 3 |
| 44 | 376.80 | humidity | 70 | 270 | < th | dose independent | rect. | 10 | 10 |
| 88 | 377.50 | humidity | 70 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 90 | 377.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 91 | 377.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 92 | 377.52 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 16 |
| 99 | 377.53 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 14 |
| 154 | 377.88 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 161 | 377.94 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 171 | 377.99 | humidity | 60 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 173 | 378.01 | humidity | 60 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 184 | 378.11 | humidity | 90 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 189 | 378.15 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 12 |
| 195 | 378.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 21 |
| 208 | 378.26 | humidity | 70 | 720 | > th | dose independent | rect. | 9 | 4 |
| 220 | 378.32 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 258 | 378.54 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 296 | 378.66 | temperature | 20 | 14400 | > th | dose dependent | sin | 20 | NA |
| 323 | 378.76 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 337 | 378.78 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 353 | 378.81 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 441 | 379.06 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 442 | 379.06 | temperature | 10 | 14400 | > th | dose dependent | sin | 20 | NA |
| 448 | 379.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 453 | 379.08 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 472 | 379.14 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 505 | 379.22 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 20 |
| 507 | 379.22 | temperature | 30 | 14400 | < th | dose dependent | rect. | 8 | 12 |
| 514 | 379.24 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 516 | 379.24 | humidity | 70 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 564 | 379.37 | humidity | 70 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 567 | 379.37 | humidity | 50 | 14400 | > th | dose dependent | rect. | 16 | 6 |
| 570 | 379.39 | humidity | 70 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 595 | 379.44 | temperature | 30 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 645 | 379.50 | humidity | 70 | 90 | > th | dose independent | rect. | 9 | 21 |
| 656 | 379.54 | temperature | 10 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 719 | 379.62 | humidity | 70 | 90 | < th | dose independent | sin | 18 | NA |
| 737 | 379.66 | temperature | 30 | 14400 | < th | dose dependent | sin | 20 | NA |
| 783 | 379.77 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 22 |
| 843 | 379.92 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 865 | 379.95 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 888 | 380.00 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 928 | 380.06 | temperature | 25 | 14400 | < th | dose independent | rect. | 7 | 13 |
| 929 | 380.06 | humidity | 70 | 720 | < th | dose independent | rect. | 16 | 22 |
| 939 | 380.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 7 | 13 |
| 940 | 380.07 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 948 | 380.08 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 949 | 380.08 | radiation | 1 | 1440 | < th | dose dependent | sin | 9 | NA |