Os04g0166300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
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Os04g0166300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, uncharacterized transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.88 | 0.587 | 11.3 | 1.35 | 0.145 | -24.3 | -0.577 | 150 | -0.223 | 18.4 | 994.7 | 1517 | -- | -- |
| 168.52 | 0.609 | 11.8 | -1.56 | 0.089 | 0.51 | -0.769 | -- | -0.237 | 18.6 | 997.3 | 189 | -- | -- |
| 156.63 | 0.583 | 11.3 | 1.36 | 0.148 | -24.2 | -- | 150 | -0.222 | 17.4 | 994.7 | 1525 | -- | -- |
| 160.67 | 0.59 | 11.9 | -1.65 | 0.249 | 0.981 | -- | -- | -0.212 | 17.6 | 997.5 | 1261 | -- | -- |
| 157.06 | 0.584 | 11.4 | 1.13 | -- | -25 | -- | 155 | -0.224 | -- | 996.3 | 1346 | -- | -- |
| 169.65 | 0.611 | 11.8 | -1.54 | 0.0963 | -- | -0.747 | -- | -0.244 | 18.6 | -- | -- | -- | -- |
| 170.99 | 0.612 | 11.8 | -1.53 | 0.0987 | -- | -- | -- | -0.246 | 17.4 | -- | -- | -- | -- |
| 157.75 | 0.585 | 11.8 | -1.6 | -- | 1.64 | -- | -- | -0.226 | -- | 997.3 | 1331 | -- | -- |
| 223.13 | 0.696 | 11.8 | -- | 0.148 | 1.35 | -- | -- | -0.0489 | 16.9 | 997.4 | 1329 | -- | -- |
| 171.5 | 0.612 | 11.8 | -1.53 | -- | -- | -- | -- | -0.249 | -- | -- | -- | -- | -- |
| 232.33 | 0.713 | 11.8 | -- | 0.125 | -- | -- | -- | -0.0763 | 16.9 | -- | -- | -- | -- |
| 224.29 | 0.698 | 11.8 | -- | -- | 1.32 | -- | -- | -0.0523 | -- | 997.4 | 1332 | -- | -- |
| 233.15 | 0.713 | 11.8 | -- | -- | -- | -- | -- | -0.079 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 145.35 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 3 |
| 9 | 147.71 | temperature | 25 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 28 | 150.41 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 4 |
| 32 | 150.77 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 17 |
| 33 | 150.82 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 3 |
| 39 | 151.11 | temperature | 25 | 720 | > th | dose independent | rect. | 2 | 2 |
| 41 | 151.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 43 | 151.35 | temperature | 25 | 270 | > th | dose independent | rect. | 5 | 1 |
| 46 | 151.42 | atmosphere | 1000 | 90 | < th | dose dependent | rect. | 7 | 2 |
| 48 | 151.46 | temperature | 25 | 270 | > th | dose dependent | rect. | 20 | 13 |
| 52 | 151.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 55 | 151.60 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 61 | 151.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 18 |
| 72 | 152.02 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 6 | 4 |
| 96 | 152.40 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 115 | 152.72 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 124 | 152.85 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 139 | 153.15 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 21 | 19 |
| 150 | 153.29 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 6 | 2 |
| 169 | 153.47 | atmosphere | 1000 | 90 | < th | dose independent | rect. | 6 | 1 |
| 187 | 153.61 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 204 | 153.63 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 227 | 153.89 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 243 | 154.02 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 8 | 8 |
| 244 | 154.02 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 250 | 154.03 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 267 | 154.20 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 16 |
| 331 | 154.64 | temperature | 30 | 10 | > th | dose dependent | rect. | 12 | 1 |
| 336 | 154.68 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 11 |
| 376 | 155.05 | radiation | 30 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 392 | 155.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 398 | 155.10 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 1 | 15 |
| 412 | 155.22 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 24 | 18 |
| 447 | 155.44 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 455 | 155.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 465 | 155.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 470 | 155.53 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 6 |
| 471 | 155.54 | atmosphere | 995 | 1440 | < th | dose independent | rect. | 18 | 1 |
| 494 | 155.54 | atmosphere | 995 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 519 | 155.56 | atmosphere | 995 | 1440 | > th | dose independent | sin | 9 | NA |
| 564 | 155.73 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 11 | 12 |
| 568 | 155.75 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 585 | 155.78 | atmosphere | 995 | 1440 | < th | dose independent | sin | 9 | NA |
| 612 | 155.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 637 | 155.81 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 665 | 155.82 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 699 | 155.84 | atmosphere | 995 | 1440 | > th | dose independent | sin | 17 | NA |
| 702 | 155.84 | atmosphere | 995 | 1440 | < th | dose dependent | sin | 9 | NA |
| 712 | 155.86 | atmosphere | 995 | 1440 | > th | dose independent | rect. | 4 | 23 |
| 740 | 155.87 | temperature | 30 | 90 | > th | dose independent | rect. | 10 | 1 |
| 866 | 155.99 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 902 | 156.01 | atmosphere | 995 | 1440 | < th | dose dependent | no | NA | NA |