Os04g0166000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0166000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 174.52 | 0.621 | 3.74 | -1.85 | 0.43 | 0.434 | 0.0453 | -0.753 | -0.834 | 3.01 | 20.09 | 20 | -- | -- |
| 176.69 | 0.619 | 3.73 | -1.72 | 0.437 | 0.513 | 0.367 | -- | -0.797 | 2.93 | 19.8 | 29 | -- | -- |
| 174.53 | 0.615 | 3.74 | -1.85 | 0.431 | 0.43 | -- | -0.753 | -0.835 | 3.02 | 20.11 | 25 | -- | -- |
| 177.1 | 0.62 | 3.73 | -1.73 | 0.447 | 0.518 | -- | -- | -0.805 | 3.09 | 19.73 | 37 | -- | -- |
| 184.47 | 0.633 | 3.74 | -1.81 | -- | 0.331 | -- | -0.822 | -0.821 | -- | 20.1 | 35 | -- | -- |
| 186.31 | 0.64 | 3.7 | -1.59 | 0.349 | -- | 0.306 | -- | -0.717 | 3.41 | -- | -- | -- | -- |
| 186.59 | 0.64 | 3.71 | -1.59 | 0.352 | -- | -- | -- | -0.719 | 3.58 | -- | -- | -- | -- |
| 187.82 | 0.638 | 3.72 | -1.68 | -- | 0.387 | -- | -- | -0.773 | -- | 19.7 | 40 | -- | -- |
| 251.66 | 0.743 | 3.67 | -- | 0.36 | 0.208 | -- | -- | -0.571 | 3.34 | 19.73 | 37 | -- | -- |
| 193.5 | 0.65 | 3.71 | -1.58 | -- | -- | -- | -- | -0.71 | -- | -- | -- | -- | -- |
| 253.36 | 0.745 | 3.67 | -- | 0.321 | -- | -- | -- | -0.542 | 3.62 | -- | -- | -- | -- |
| 258.31 | 0.751 | 3.67 | -- | -- | 0.126 | -- | -- | -0.555 | -- | 20.56 | 29 | -- | -- |
| 259.09 | 0.751 | 3.67 | -- | -- | -- | -- | -- | -0.535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 169.58 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 19 |
| 5 | 170.06 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 20 |
| 41 | 172.42 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 23 |
| 57 | 173.01 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 69 | 173.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 4 |
| 72 | 173.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 75 | 173.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 81 | 173.31 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 20 |
| 90 | 173.37 | temperature | 20 | 30 | > th | dose independent | rect. | 7 | 23 |
| 92 | 173.38 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 17 |
| 95 | 173.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 98 | 173.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 117 | 173.58 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 21 |
| 124 | 173.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 12 |
| 129 | 173.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 9 |
| 138 | 173.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 140 | 173.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 151 | 173.72 | temperature | 25 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 190 | 173.89 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 16 |
| 207 | 173.95 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 225 | 174.01 | temperature | 20 | 30 | < th | dose independent | rect. | 22 | 23 |
| 231 | 174.02 | temperature | 20 | 10 | < th | dose independent | rect. | 4 | 23 |
| 259 | 174.10 | temperature | 20 | 10 | < th | dose independent | sin | 15 | NA |
| 297 | 174.20 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 309 | 174.24 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 16 |
| 316 | 174.25 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 338 | 174.30 | temperature | 25 | 270 | < th | dose dependent | sin | 20 | NA |
| 340 | 174.31 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 358 | 174.35 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 375 | 174.39 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 11 |
| 434 | 174.53 | temperature | 20 | 10 | < th | dose independent | rect. | 13 | 23 |
| 477 | 174.63 | temperature | 20 | 10 | > th | dose independent | no | NA | NA |
| 485 | 174.65 | temperature | 20 | 10 | < th | dose independent | no | NA | NA |
| 487 | 174.65 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 23 |
| 488 | 174.65 | temperature | 20 | 10 | < th | dose independent | rect. | 11 | 23 |
| 489 | 174.65 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 23 |
| 493 | 174.66 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 13 |
| 496 | 174.66 | temperature | 20 | 10 | < th | dose independent | rect. | 9 | 23 |
| 505 | 174.67 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 23 |
| 517 | 174.69 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 23 |
| 522 | 174.70 | temperature | 20 | 90 | < th | dose independent | rect. | 11 | 18 |
| 533 | 174.72 | atmosphere | 1010 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 608 | 174.86 | temperature | 20 | 10 | > th | dose independent | sin | 15 | NA |
| 709 | 175.02 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 815 | 175.19 | temperature | 25 | 10 | < th | dose independent | rect. | 3 | 6 |
| 982 | 175.39 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 1 |