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Os04g0165400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hrf1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.3 (0.0106) R2 : 0.204
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.241 (0.0223) R2dN8 : 0.263 R2N8 : 0.204
σ : 0.2
deviance : 18.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.77 0.161 12.3 0.033 0.128 0.511 -0.38 -0.783 0.158 5.32 9.566 651 -- --
11.96 0.161 12.3 0.134 0.0535 0.416 -0.355 -- 0.191 4.23 8.341 2203 -- --
12.02 0.161 12.3 -0.00224 0.017 0.465 -- -0.756 0.15 4.8 7.974 1132 -- --
12.3 0.163 12.3 0.139 0.0494 0.426 -- -- 0.188 3.5 7.396 2196 -- --
12.03 0.162 12.3 0.0029 -- 0.466 -- -0.739 0.152 -- 7.921 1143 -- --
15.35 0.184 12.3 0.284 0.0739 -- -0.3 -- 0.27 2.52 -- -- -- --
15.63 0.185 12.3 0.292 0.0762 -- -- -- 0.272 1.03 -- -- -- --
12.37 0.164 12.3 0.132 -- 0.421 -- -- 0.187 -- 6.903 2447 -- --
12.69 0.166 12.3 -- 0.0611 0.476 -- -- 0.171 1.79 -1.356 4947 -- --
15.99 0.187 12.3 0.295 -- -- -- -- 0.274 -- -- -- -- --
17.88 0.198 12.3 -- 0.0811 -- -- -- 0.24 1.18 -- -- -- --
12.75 0.166 12.3 -- -- 0.475 -- -- 0.164 -- 8.177 2485 -- --
18.29 0.2 12.3 -- -- -- -- -- 0.241 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.24 wind 9 43200 > th dose dependent rect. 18 12
3 11.32 wind 9 43200 > th dose dependent rect. 18 3
5 11.38 wind 9 43200 < th dose independent rect. 18 3
7 11.39 wind 9 43200 > th dose independent rect. 18 3
8 11.43 wind 9 43200 > th dose dependent rect. 18 6
16 11.54 temperature 10 270 > th dose dependent rect. 12 23
18 11.59 temperature 20 4320 < th dose independent rect. 21 1
19 11.59 wind 9 43200 > th dose independent rect. 18 12
20 11.60 temperature 10 1440 > th dose dependent rect. 17 11
24 11.61 temperature 30 1440 < th dose dependent rect. 17 11
25 11.62 temperature 20 4320 > th dose independent rect. 21 1
27 11.62 temperature 20 1440 > th dose dependent rect. 20 1
28 11.62 temperature 30 1440 < th dose dependent rect. 20 1
34 11.62 temperature 10 1440 > th dose dependent rect. 17 16
38 11.63 wind 7 43200 > th dose independent rect. 20 1
39 11.63 temperature 10 1440 > th dose dependent rect. 20 1
53 11.63 temperature 30 1440 < th dose dependent rect. 17 16
58 11.64 wind 9 43200 > th dose independent rect. 18 6
63 11.64 temperature 10 1440 > th dose dependent rect. 18 5
89 11.65 temperature 20 1440 > th dose dependent rect. 18 4
90 11.65 temperature 30 1440 < th dose dependent rect. 18 4
111 11.66 temperature 15 1440 > th dose dependent sin 11 NA
144 11.66 temperature 10 720 > th dose dependent rect. 20 23
175 11.67 temperature 10 720 > th dose dependent rect. 3 16
177 11.67 temperature 15 720 > th dose dependent rect. 1 18
180 11.67 temperature 10 720 > th dose dependent rect. 1 23
214 11.68 temperature 15 720 > th dose dependent rect. 23 20
221 11.69 temperature 30 1440 < th dose dependent sin 11 NA
260 11.70 temperature 20 1440 > th dose dependent rect. 7 1
261 11.70 temperature 20 4320 > th dose dependent rect. 17 1
317 11.71 temperature 15 30 > th dose dependent rect. 1 23
364 11.73 temperature 20 4320 > th dose independent rect. 18 5
452 11.75 temperature 10 1440 > th dose dependent rect. 1 8
455 11.75 temperature 30 1440 < th dose dependent rect. 1 8
487 11.76 wind 9 43200 < th dose independent rect. 18 7
531 11.77 wind 1 43200 > th dose dependent rect. 20 1
532 11.77 temperature 10 4320 > th dose dependent rect. 17 1
607 11.78 temperature 10 720 > th dose dependent no NA NA
681 11.79 wind 9 43200 < th dose independent rect. 18 12
687 11.79 wind 9 43200 < th dose dependent rect. 20 1
692 11.79 temperature 25 1440 < th dose dependent rect. 1 1
696 11.79 temperature 10 1440 > th dose dependent rect. 7 2
699 11.79 temperature 30 1440 < th dose dependent rect. 7 2
749 11.80 temperature 20 4320 < th dose independent rect. 20 3
765 11.80 temperature 25 1440 < th dose dependent rect. 1 3
828 11.80 temperature 10 1440 > th dose dependent rect. 6 23
936 11.82 wind 5 43200 > th dose independent rect. 14 11
947 11.82 temperature 25 1440 < th dose dependent rect. 3 1
949 11.82 atmosphere 995 43200 < th dose dependent rect. 15 1
954 11.82 temperature 10 1440 > th dose dependent rect. 5 4