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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0165000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thaumatin-like protein 1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0302) R2 : 0.292
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.58 (0.115) R2dE : 0.315 R2E : 0.272
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.198 (0.0656) R2dN8 : 0.0197 R2N8 : -0.0229
σ : 0.563
deviance : 146.09
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 18.43
memory length : 5204
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
130.96 0.538 3.21 0.00485 0.245 1 -1.33 -1.8 0.2 11.3 19.1 3870 -- --
133.14 0.537 3.27 -0.0381 0.256 1.49 -1.39 -- 0.183 11.5 18.5 5165 -- --
138.15 0.547 3.22 -0.0243 0.245 1.04 -- -1.86 0.201 11 18.75 3810 -- --
141.65 0.554 3.27 -0.07 0.258 1.52 -- -- 0.181 10.9 18.5 5206 -- --
142.03 0.555 3.22 -0.0477 -- 1.09 -- -1.81 0.19 -- 18.8 3788 -- --
164.29 0.601 3.34 -0.956 0.284 -- -1.44 -- -0.153 11.7 -- -- -- --
173.22 0.616 3.35 -1.01 0.292 -- -- -- -0.16 11.3 -- -- -- --
145.36 0.562 3.28 -0.12 -- 1.53 -- -- 0.216 -- 19 2421 -- --
141.77 0.555 3.26 -- 0.26 1.56 -- -- 0.193 10.9 18.4 5205 -- --
178.56 0.624 3.35 -1.02 -- -- -- -- -0.163 -- -- -- -- --
200.36 0.662 3.32 -- 0.303 -- -- -- -0.047 11.5 -- -- -- --
146.09 0.563 3.27 -- -- 1.58 -- -- 0.198 -- 18.43 5204 -- --
206.11 0.67 3.33 -- -- -- -- -- -0.0493 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 127.75 temperature 20 720 < th dose independent rect. 3 5
2 127.98 temperature 20 4320 < th dose dependent rect. 16 1
6 128.41 temperature 20 720 < th dose independent rect. 5 2
19 129.19 temperature 15 4320 < th dose independent rect. 15 3
36 130.28 temperature 20 720 > th dose independent rect. 23 10
39 130.34 temperature 20 4320 < th dose independent rect. 14 8
42 130.40 temperature 20 4320 < th dose independent rect. 13 10
48 130.50 temperature 20 4320 > th dose independent rect. 14 8
56 130.58 temperature 20 4320 > th dose independent rect. 16 3
57 130.58 temperature 20 4320 > th dose independent rect. 12 11
59 130.59 temperature 20 720 < th dose independent rect. 23 9
74 130.75 temperature 20 720 > th dose independent rect. 21 14
78 130.78 temperature 20 4320 < th dose independent sin 19 NA
81 130.79 temperature 20 4320 > th dose independent rect. 17 1
83 130.80 temperature 20 720 > th dose independent rect. 23 12
96 130.87 temperature 20 720 < th dose independent sin 8 NA
108 130.94 temperature 20 720 > th dose independent sin 7 NA
109 130.94 temperature 20 720 > th dose independent rect. 1 8
115 130.96 temperature 20 4320 > th dose independent sin 19 NA
292 131.92 temperature 20 720 < th dose independent rect. 21 13
352 132.15 temperature 15 4320 > th dose dependent rect. 16 1
435 132.36 temperature 20 4320 < th dose dependent sin 17 NA
487 132.48 humidity 60 43200 > th dose independent rect. 24 1
523 132.57 temperature 15 4320 < th dose dependent sin 20 NA
533 132.60 temperature 25 4320 < th dose dependent sin 20 NA
694 132.94 humidity 60 43200 > th dose independent rect. 23 3
750 133.04 humidity 70 43200 < th dose dependent rect. 23 4
757 133.05 humidity 70 43200 < th dose dependent rect. 24 2
760 133.06 humidity 70 43200 < th dose independent rect. 21 8
782 133.11 humidity 70 43200 > th dose independent rect. 21 6
795 133.14 humidity 70 43200 > th dose independent rect. 21 9
868 133.28 temperature 10 720 > th dose dependent rect. 23 10
933 133.38 humidity 70 43200 > th dose independent rect. 22 1
938 133.39 humidity 50 43200 < th dose dependent rect. 16 1
967 133.45 humidity 70 43200 < th dose independent rect. 23 4