FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0155200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.18 (0.041) R2 : 0.000389
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0364 (0.0864) R2dN8 : 0.000502 R2N8 : 0.000389
σ : 0.773
deviance : 274.09
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
237.2 0.724 3.24 -1.24 0.497 0.951 -0.381 -3.06 -0.0278 7.25 28.5 1321 -- --
237.95 0.718 3.17 -0.586 0.499 0.613 -0.334 -- 0.0302 7.28 28.2 1293 -- --
237.54 0.718 3.24 -1.22 0.501 0.934 -- -2.89 -0.0382 7.07 28.34 1310 -- --
238.29 0.719 3.17 -0.611 0.491 0.615 -- -- 0.0248 7.1 28.15 1293 -- --
250.58 0.737 3.25 -1.18 -- 0.914 -- -2.63 -0.0321 -- 28.27 1333 -- --
255.84 0.75 3.18 -0.428 0.512 -- -0.164 -- -0.021 6.52 -- -- -- --
255.89 0.749 3.18 -0.431 0.512 -- -- -- -0.0207 6.42 -- -- -- --
250.89 0.738 3.19 -0.616 -- 0.627 -- -- 0.0109 -- 27.6 1327 -- --
246.78 0.732 3.14 -- 0.507 0.553 -- -- 0.126 7.08 33.1 1173 -- --
269.49 0.767 3.19 -0.417 -- -- -- -- -0.00992 -- -- -- -- --
260.78 0.755 3.17 -- 0.506 -- -- -- 0.0272 6.46 -- -- -- --
259.48 0.75 3.16 -- -- 0.539 -- -- 0.138 -- 33.1 1178 -- --
274.09 0.773 3.18 -- -- -- -- -- 0.0364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 235.05 radiation 10 1440 > th dose independent rect. 16 15
2 235.10 wind 1 43200 < th dose dependent rect. 8 1
3 235.20 temperature 25 1440 > th dose dependent rect. 18 2
6 235.31 temperature 30 14400 > th dose independent rect. 17 1
13 235.68 temperature 30 14400 > th dose independent rect. 12 1
16 235.72 temperature 20 270 > th dose dependent rect. 2 7
17 235.73 temperature 30 14400 < th dose independent rect. 17 1
18 235.73 temperature 30 14400 > th dose dependent rect. 16 2
58 235.91 temperature 30 14400 < th dose independent rect. 12 1
59 235.91 temperature 30 14400 < th dose independent rect. 16 15
60 235.91 wind 5 43200 > th dose dependent rect. 2 16
61 235.92 temperature 30 14400 < th dose independent rect. 16 11
66 235.93 temperature 30 14400 < th dose independent rect. 16 9
74 235.94 temperature 30 14400 < th dose independent rect. 15 5
143 236.07 wind 7 43200 < th dose independent rect. 2 15
146 236.09 wind 7 43200 > th dose independent rect. 2 15
170 236.15 temperature 20 30 > th dose dependent rect. 2 7
173 236.17 temperature 30 14400 > th dose independent sin 14 NA
187 236.19 wind 1 43200 < th dose dependent rect. 1 1
211 236.25 temperature 30 14400 < th dose independent sin 13 NA
227 236.29 temperature 30 14400 > th dose dependent sin 13 NA
259 236.37 wind 7 43200 > th dose independent sin 2 NA
265 236.38 wind 7 43200 < th dose independent sin 2 NA
280 236.41 temperature 30 14400 > th dose independent rect. 11 7
283 236.41 wind 7 43200 < th dose independent rect. 20 21
284 236.41 wind 5 43200 > th dose dependent rect. 8 9
289 236.42 wind 5 43200 > th dose dependent sin 0 NA
295 236.43 wind 7 43200 > th dose independent rect. 6 10
299 236.43 wind 7 43200 > th dose independent rect. 20 21
307 236.44 wind 5 43200 > th dose dependent rect. 10 21
312 236.46 wind 7 43200 < th dose independent rect. 6 10
313 236.46 wind 7 43200 < th dose independent rect. 2 20
318 236.47 radiation 10 1440 > th dose independent rect. 16 2
343 236.47 wind 7 43200 > th dose independent rect. 2 20
368 236.51 wind 5 43200 > th dose dependent rect. 9 7
482 236.63 temperature 30 14400 < th dose independent rect. 11 16
486 236.63 temperature 30 14400 < th dose independent rect. 11 20
495 236.64 temperature 30 14400 < th dose independent rect. 11 9
499 236.64 temperature 30 14400 < th dose independent rect. 11 13
637 236.76 wind 5 43200 > th dose dependent no NA NA
655 236.78 wind 5 43200 > th dose dependent rect. 8 14
672 236.79 wind 7 43200 < th dose independent rect. 8 23
685 236.80 wind 7 43200 > th dose independent rect. 6 16
695 236.81 wind 7 43200 > th dose independent rect. 8 23
696 236.81 wind 7 43200 > th dose independent rect. 10 23
699 236.81 temperature 25 1440 > th dose dependent rect. 16 15
703 236.82 wind 7 43200 < th dose independent rect. 6 16
719 236.83 wind 7 43200 < th dose independent no NA NA
722 236.83 temperature 30 720 < th dose independent rect. 18 1
744 236.85 wind 7 43200 > th dose independent no NA NA
751 236.85 wind 7 43200 > th dose independent rect. 6 23
752 236.85 wind 7 43200 < th dose independent rect. 6 23
765 236.86 radiation 10 1440 > th dose dependent rect. 17 13
776 236.87 wind 7 43200 < th dose independent rect. 16 23
785 236.88 wind 7 43200 > th dose independent rect. 16 23
822 236.91 wind 5 43200 > th dose dependent rect. 13 23
919 236.98 wind 5 43200 > th dose independent rect. 14 23
920 236.98 wind 7 43200 < th dose independent rect. 13 23
981 237.01 wind 7 43200 > th dose independent rect. 12 23