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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0155000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0115) R2 : 0.00214
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.024 (0.0242) R2dN8 : 0.00277 R2N8 : 0.00214
σ : 0.216
deviance : 21.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.29 0.212 3.04 0.0518 0.064 0.07 -0.0721 0.782 0.0195 7.39 91 5916 -- --
21.05 0.214 3.04 0.00037 0.0634 0.138 -0.0892 -- -0.00726 7.12 103.7 4301 -- --
20.3 0.21 3.04 0.0505 0.0638 0.0694 -- 0.783 0.0199 7.6 90.99 5928 -- --
21.06 0.214 3.04 -0.00613 0.0629 0.135 -- -- -0.000226 7.36 88 4276 -- --
20.52 0.211 3.04 0.0509 -- 0.07 -- 0.783 0.0207 -- 91 5913 -- --
21.28 0.216 3.04 -0.00663 0.0633 -- -0.0891 -- 0.0218 7.08 -- -- -- --
21.29 0.216 3.04 -0.00817 0.063 -- -- -- 0.0221 7.4 -- -- -- --
21.27 0.215 3.04 -0.00594 -- 0.135 -- -- 0.000624 -- 87.91 4298 -- --
21.06 0.214 3.04 -- 0.0624 0.137 -- -- -8.52e-05 7.47 88 4263 -- --
21.51 0.217 3.04 -0.00715 -- -- -- -- 0.0232 -- -- -- -- --
21.3 0.216 3.04 -- 0.063 -- -- -- 0.023 7.41 -- -- -- --
21.27 0.215 3.04 -- -- 0.138 -- -- 0.00075 -- 88 4299 -- --
21.51 0.216 3.04 -- -- -- -- -- 0.024 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.77 temperature 25.0 30 > th dose dependent rect. 20 1
2 17.78 wind 3.0 30 > th dose independent rect. 20 1
3 17.79 temperature 25.0 10 > th dose independent rect. 20 1
4 17.80 radiation 20.0 43200 < th dose dependent rect. 21 1
16 17.85 wind 1.0 30 > th dose dependent rect. 20 1
19 17.87 temperature 10.0 1440 > th dose independent rect. 21 1
22 17.87 temperature 30.0 1440 < th dose independent rect. 21 1
26 17.87 humidity 50.0 1440 > th dose independent rect. 21 1
32 17.87 atmosphere 995.0 1440 > th dose independent rect. 21 1
33 17.87 radiation 1.0 1440 < th dose independent rect. 21 1
53 17.87 temperature 10.0 1440 > th dose independent rect. 22 23
56 17.87 atmosphere 1015.0 30 < th dose dependent rect. 20 1
61 17.88 wind 5.0 30 < th dose independent rect. 20 1
64 17.88 wind 9.0 1440 < th dose independent rect. 21 1
65 17.88 temperature 10.0 30 > th dose independent rect. 20 1
68 17.88 temperature 30.0 30 < th dose independent rect. 20 1
69 17.88 humidity 50.0 30 > th dose independent rect. 20 1
72 17.88 humidity 90.0 30 < th dose independent rect. 20 1
73 17.88 atmosphere 995.0 30 > th dose independent rect. 20 1
74 17.88 atmosphere 1010.0 30 < th dose independent rect. 20 1
76 17.88 radiation 1.0 30 < th dose independent rect. 20 1
81 17.88 precipitation 0.1 30 < th dose independent rect. 20 1
82 17.88 temperature 10.0 30 > th dose independent rect. 21 23
83 17.88 radiation 1.0 30 < th dose dependent rect. 20 1
88 17.88 precipitation 0.1 30 < th dose dependent rect. 20 1
91 17.89 atmosphere 1005.0 30 > th dose dependent rect. 20 1
94 17.90 humidity 50.0 30 > th dose dependent rect. 20 1
96 17.91 atmosphere 995.0 30 > th dose dependent rect. 20 1
99 17.92 wind 9.0 30 < th dose dependent rect. 20 1
101 17.92 humidity 90.0 30 < th dose dependent rect. 20 1
109 18.03 wind 9.0 30 < th dose independent rect. 21 23
114 18.10 temperature 30.0 30 < th dose dependent rect. 20 1
166 19.04 atmosphere 995.0 30 > th dose independent rect. 21 23
175 19.36 precipitation 0.1 30 < th dose independent rect. 21 23
176 19.36 precipitation 0.1 30 < th dose dependent rect. 21 23
204 19.72 humidity 50.0 30 > th dose independent rect. 21 23
239 19.86 precipitation 0.1 1440 < th dose independent rect. 21 1
240 19.86 precipitation 0.1 1440 < th dose dependent rect. 21 1
295 20.08 temperature 30.0 10 < th dose independent rect. 21 23
307 20.12 atmosphere 1015.0 30 < th dose independent rect. 21 23
327 20.19 radiation 20.0 30 < th dose dependent rect. 21 23
336 20.22 humidity 90.0 90 < th dose dependent rect. 2 5
338 20.23 humidity 90.0 30 < th dose independent rect. 3 1
345 20.24 atmosphere 1000.0 720 > th dose independent rect. 21 14
346 20.24 humidity 80.0 90 < th dose dependent rect. 2 1
347 20.24 humidity 90.0 10 < th dose dependent rect. 3 1
363 20.27 atmosphere 1000.0 720 > th dose independent rect. 23 10
364 20.27 atmosphere 1000.0 90 > th dose independent rect. 8 11
368 20.28 humidity 80.0 14400 < th dose dependent rect. 4 5
370 20.28 atmosphere 995.0 30 > th dose dependent rect. 21 23
443 20.33 wind 1.0 90 > th dose independent rect. 8 11
446 20.33 radiation 40.0 30 < th dose independent rect. 21 23
456 20.33 humidity 80.0 14400 < th dose dependent rect. 1 9
460 20.34 humidity 70.0 14400 > th dose independent rect. 6 4
476 20.35 humidity 70.0 14400 > th dose independent rect. 8 2
479 20.35 humidity 70.0 14400 < th dose independent rect. 8 2
482 20.35 humidity 70.0 14400 < th dose independent rect. 6 4
493 20.35 radiation 10.0 30 < th dose independent rect. 21 23
495 20.35 humidity 80.0 90 < th dose dependent rect. 24 3
496 20.35 temperature 25.0 30 > th dose dependent rect. 20 8
505 20.36 atmosphere 1000.0 720 > th dose independent rect. 21 12
506 20.36 wind 7.0 90 < th dose independent rect. 19 13
522 20.37 precipitation 0.1 720 < th dose independent rect. 9 8
523 20.37 precipitation 0.1 90 < th dose independent rect. 19 13
533 20.37 precipitation 0.1 720 < th dose dependent rect. 9 8
535 20.37 precipitation 0.1 90 < th dose dependent rect. 19 13
544 20.39 humidity 60.0 14400 < th dose independent rect. 11 1
560 20.40 temperature 10.0 90 > th dose independent rect. 8 11
561 20.40 atmosphere 1015.0 90 < th dose independent rect. 8 11
562 20.40 temperature 10.0 90 > th dose independent rect. 19 13
563 20.40 temperature 30.0 90 < th dose independent rect. 19 13
564 20.40 humidity 50.0 90 > th dose independent rect. 19 13
566 20.40 atmosphere 995.0 90 > th dose independent rect. 19 13
576 20.41 atmosphere 1000.0 720 > th dose independent rect. 8 1
586 20.42 precipitation 0.1 90 < th dose independent rect. 8 11
587 20.42 humidity 50.0 14400 > th dose dependent rect. 8 1
595 20.42 precipitation 0.1 90 < th dose dependent rect. 8 11
599 20.43 humidity 60.0 14400 > th dose independent rect. 11 1
601 20.43 humidity 50.0 90 > th dose independent rect. 8 11
602 20.43 atmosphere 1015.0 90 < th dose independent rect. 19 13
609 20.44 wind 3.0 14400 > th dose independent rect. 19 1
615 20.44 humidity 60.0 14400 < th dose independent rect. 10 3
624 20.44 wind 9.0 90 < th dose independent rect. 8 11
627 20.44 atmosphere 1000.0 10 > th dose independent rect. 8 12
629 20.44 radiation 40.0 90 < th dose independent rect. 19 13
632 20.44 humidity 80.0 14400 < th dose dependent sin 8 NA
633 20.44 humidity 60.0 4320 > th dose dependent rect. 11 1
658 20.45 wind 1.0 14400 < th dose dependent rect. 4 3
681 20.46 humidity 80.0 14400 > th dose independent rect. 6 7
694 20.46 atmosphere 1005.0 30 > th dose dependent rect. 2 2
720 20.46 temperature 10.0 30 > th dose dependent rect. 21 23
722 20.47 wind 1.0 14400 < th dose independent rect. 4 3
797 20.48 humidity 70.0 720 > th dose independent rect. 21 12
810 20.48 humidity 90.0 14400 < th dose dependent rect. 12 1
815 20.48 humidity 60.0 14400 < th dose dependent rect. 13 3
822 20.48 humidity 60.0 14400 < th dose dependent rect. 12 5
838 20.49 wind 3.0 14400 < th dose independent rect. 19 1
839 20.49 humidity 50.0 14400 > th dose independent rect. 15 1
847 20.49 wind 1.0 14400 > th dose independent rect. 4 3
854 20.49 humidity 70.0 4320 > th dose independent rect. 9 6
860 20.49 atmosphere 1000.0 720 > th dose independent rect. 21 8
913 20.49 humidity 50.0 4320 > th dose dependent rect. 23 16
935 20.50 temperature 10.0 1440 > th dose independent rect. 9 11
939 20.50 temperature 10.0 1440 > th dose independent rect. 20 13
943 20.50 humidity 50.0 1440 > th dose independent rect. 20 13
953 20.50 atmosphere 995.0 720 > th dose independent rect. 17 16
957 20.50 humidity 90.0 14400 < th dose dependent sin 4 NA
1000 20.50 humidity 50.0 4320 > th dose dependent rect. 3 12