Os04g0152500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0152500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 126.55 | 0.529 | 4200 | -25600 | 0.0935 | -757000 | -0.194 | 4630000 | 0.0559 | 5.56 | 1 | 4 | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 141.78 | 0.558 | 3.19 | 0.155 | 0.113 | -- | 0.29 | -- | 0.0406 | 11.4 | -- | -- | -- | -- |
| 142.06 | 0.558 | 3.19 | 0.165 | 0.119 | -- | -- | -- | 0.0407 | 10.1 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 142.92 | 0.559 | 3.19 | 0.164 | -- | -- | -- | -- | 0.0406 | -- | -- | -- | -- | -- |
| 142.78 | 0.559 | 3.2 | -- | 0.119 | -- | -- | -- | 0.0223 | 9.98 | -- | -- | -- | -- |
| -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- | -- |
| 143.63 | 0.559 | 3.2 | -- | -- | -- | -- | -- | 0.0224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 118.43 | temperature | 30 | 30 | > th | dose independent | rect. | 16 | 3 |
| 16 | 118.78 | atmosphere | 995 | 90 | > th | dose independent | sin | 9 | NA |
| 48 | 119.03 | atmosphere | 1000 | 30 | < th | dose dependent | rect. | 16 | 2 |
| 53 | 119.11 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 17 | 1 |
| 89 | 119.35 | temperature | 30 | 90 | > th | dose dependent | rect. | 16 | 3 |
| 111 | 119.81 | humidity | 70 | 30 | < th | dose independent | rect. | 18 | 1 |
| 177 | 120.46 | atmosphere | 995 | 90 | < th | dose independent | sin | 9 | NA |
| 179 | 120.48 | atmosphere | 995 | 90 | < th | dose dependent | sin | 9 | NA |
| 289 | 120.58 | atmosphere | 995 | 10 | < th | dose independent | sin | 8 | NA |
| 537 | 121.00 | radiation | 10 | 90 | > th | dose dependent | rect. | 17 | 1 |
| 578 | 121.88 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 1 |
| 633 | 123.00 | atmosphere | 1000 | 270 | < th | dose dependent | rect. | 14 | 4 |
| 636 | 123.12 | temperature | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 659 | 123.78 | atmosphere | 995 | 30 | > th | dose independent | rect. | 3 | 23 |
| 708 | 124.48 | temperature | 30 | 10 | > th | dose independent | sin | 12 | NA |
| 718 | 124.61 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 14 | 1 |
| 733 | 124.76 | atmosphere | 995 | 270 | > th | dose independent | sin | 0 | NA |
| 742 | 124.86 | atmosphere | 995 | 4320 | < th | dose dependent | rect. | 3 | 13 |
| 769 | 125.05 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 771 | 125.05 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 24 | 15 |
| 787 | 125.10 | atmosphere | 995 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 808 | 125.32 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 873 | 125.76 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 11 | 4 |
| 875 | 125.77 | atmosphere | 995 | 270 | < th | dose independent | rect. | 14 | 4 |
| 986 | 126.34 | atmosphere | 995 | 270 | < th | dose independent | sin | 2 | NA |
| 989 | 126.37 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 992 | 126.39 | atmosphere | 995 | 4320 | > th | dose independent | rect. | 22 | 17 |