Os04g0151600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os04g0151600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.11 | 0.431 | 9.68 | 1.64 | 1.02 | -1.75 | -0.614 | -0.719 | 1.12 | 22 | 19.4 | 6336 | -- | -- |
| 83.82 | 0.426 | 9.69 | 1.59 | 1 | -1.68 | -0.672 | -- | 1.15 | 21.9 | 18.7 | 7720 | -- | -- |
| 83.19 | 0.425 | 9.67 | 1.6 | 1.04 | -2.22 | -- | -1.47 | 1.13 | 22 | 18.7 | 6357 | -- | -- |
| 84.86 | 0.429 | 9.7 | 1.52 | 1.01 | -1.78 | -- | -- | 1.12 | 22 | 18.61 | 7780 | -- | -- |
| 146.02 | 0.563 | 9.63 | 1.56 | -- | -2.23 | -- | -1.36 | 1.11 | -- | 18.73 | 6521 | -- | -- |
| 120.08 | 0.514 | 9.61 | 2.64 | 1.05 | -- | -0.575 | -- | 1.52 | 22 | -- | -- | -- | -- |
| 121.34 | 0.516 | 9.61 | 2.66 | 1.05 | -- | -- | -- | 1.52 | 22.1 | -- | -- | -- | -- |
| 148.04 | 0.567 | 9.68 | 1.55 | -- | -1.79 | -- | -- | 1.11 | -- | 18.7 | 6558 | -- | -- |
| 87.39 | 0.435 | 9.8 | -- | 1.03 | -2.47 | -- | -- | 0.683 | 22 | 17.86 | 47520 | -- | -- |
| 188.03 | 0.641 | 9.58 | 2.67 | -- | -- | -- | -- | 1.52 | -- | -- | -- | -- | -- |
| 307.63 | 0.82 | 9.68 | -- | 1.06 | -- | -- | -- | 1.22 | 22.3 | -- | -- | -- | -- |
| 150.95 | 0.572 | 9.77 | -- | -- | -2.5 | -- | -- | 0.677 | -- | 17.84 | 47520 | -- | -- |
| 376.41 | 0.906 | 9.65 | -- | -- | -- | -- | -- | 1.22 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 74.62 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 2 | 74.91 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 3 | 74.94 | humidity | 50 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 5 | 74.94 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 20 |
| 6 | 74.95 | humidity | 50 | 43200 | < th | dose independent | rect. | 21 | 18 |
| 22 | 75.01 | humidity | 50 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 31 | 75.02 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 34 | 75.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 43 | 75.06 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 48 | 75.07 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 13 |
| 54 | 75.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 76 | 75.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 91 | 75.24 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 97 | 75.27 | humidity | 50 | 43200 | < th | dose independent | sin | 6 | NA |
| 104 | 75.31 | humidity | 50 | 43200 | > th | dose independent | sin | 6 | NA |
| 147 | 75.55 | humidity | 50 | 43200 | < th | dose dependent | sin | 5 | NA |
| 157 | 75.57 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 216 | 75.87 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 241 | 75.98 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 16 | 8 |
| 252 | 76.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 258 | 76.04 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 268 | 76.09 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 311 | 76.21 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 323 | 76.23 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 326 | 76.24 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 17 | NA |
| 345 | 76.27 | humidity | 50 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 440 | 76.45 | humidity | 50 | 43200 | < th | dose independent | rect. | 11 | 22 |
| 475 | 76.47 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 505 | 76.48 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 17 | NA |
| 512 | 76.49 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 543 | 76.52 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 559 | 76.55 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 829 | 76.86 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 850 | 76.89 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 869 | 76.92 | humidity | 50 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 878 | 76.92 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 16 | 23 |
| 882 | 76.93 | humidity | 50 | 43200 | < th | dose independent | no | NA | NA |
| 913 | 76.95 | humidity | 50 | 43200 | > th | dose independent | rect. | 11 | 22 |