Os04g0150400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF334 family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0150400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein of unknown function DUF334 family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.56 | 0.647 | 4.29 | -0.0496 | 0.761 | -0.107 | 2.31 | -3.42 | 0.172 | 17.8 | 1.4 | 78 | -- | -- |
| 198.4 | 0.661 | 4.34 | 0.053 | 0.712 | 0.787 | 1.42 | -- | 0.142 | 18.1 | 5.918 | 14 | -- | -- |
| 197.83 | 0.66 | 4.31 | -0.0709 | 0.779 | -0.142 | -- | -2.43 | 0.16 | 17.8 | 2.61 | 67 | -- | -- |
| 202.75 | 0.668 | 4.34 | 0.0208 | 0.733 | 0.708 | -- | -- | 0.149 | 17.8 | 6.5 | 111 | -- | -- |
| 220.52 | 0.692 | 4.3 | 0.0852 | -- | 0.736 | -- | -2.02 | 0.134 | -- | -0.8511 | 87 | -- | -- |
| 203.4 | 0.669 | 4.35 | -0.0572 | 0.777 | -- | 1.17 | -- | 0.117 | 17.9 | -- | -- | -- | -- |
| 206.62 | 0.673 | 4.34 | -0.0647 | 0.785 | -- | -- | -- | 0.122 | 17.7 | -- | -- | -- | -- |
| 223.7 | 0.697 | 4.33 | 0.114 | -- | 0.823 | -- | -- | 0.124 | -- | 2.027 | 141 | -- | -- |
| 202.69 | 0.667 | 4.34 | -- | 0.734 | 0.713 | -- | -- | 0.146 | 17.8 | 6.564 | 111 | -- | -- |
| 238.58 | 0.722 | 4.33 | -0.0897 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 206.73 | 0.673 | 4.34 | -- | 0.786 | -- | -- | -- | 0.129 | 17.7 | -- | -- | -- | -- |
| 224.01 | 0.697 | 4.33 | -- | -- | 0.792 | -- | -- | 0.112 | -- | 2.073 | 141 | -- | -- |
| 238.8 | 0.721 | 4.33 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.74 | wind | 3 | 90 | < th | dose independent | rect. | 2 | 22 |
| 2 | 186.96 | wind | 7 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 3 | 187.16 | radiation | 40 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 26 | 187.81 | wind | 1 | 90 | > th | dose dependent | rect. | 4 | 21 |
| 32 | 187.98 | wind | 1 | 90 | > th | dose dependent | rect. | 8 | 17 |
| 59 | 188.75 | wind | 3 | 90 | > th | dose independent | rect. | 8 | 17 |
| 70 | 189.01 | wind | 7 | 90 | < th | dose dependent | rect. | 15 | 22 |
| 72 | 189.02 | wind | 1 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 86 | 189.12 | wind | 9 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 90 | 189.15 | wind | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 105 | 189.30 | wind | 3 | 90 | > th | dose independent | rect. | 5 | 20 |
| 113 | 189.44 | wind | 1 | 90 | > th | dose dependent | rect. | 8 | 22 |
| 140 | 189.64 | wind | 1 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 149 | 189.74 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 17 |
| 150 | 189.74 | wind | 1 | 90 | > th | dose dependent | no | NA | NA |
| 152 | 189.76 | wind | 1 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 156 | 189.81 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 18 |
| 160 | 189.85 | wind | 9 | 90 | < th | dose dependent | no | NA | NA |
| 162 | 189.85 | wind | 7 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 163 | 189.86 | radiation | 40 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 169 | 189.87 | wind | 7 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 175 | 189.91 | radiation | 30 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 192 | 189.92 | wind | 3 | 10 | > th | dose dependent | rect. | 16 | 22 |
| 200 | 189.96 | wind | 1 | 90 | > th | dose dependent | rect. | 19 | 20 |
| 257 | 190.16 | radiation | 30 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 328 | 190.33 | wind | 1 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 354 | 190.42 | radiation | 40 | 4320 | < th | dose independent | rect. | 23 | 11 |
| 356 | 190.42 | radiation | 40 | 4320 | < th | dose independent | rect. | 18 | 16 |
| 366 | 190.44 | radiation | 40 | 4320 | < th | dose independent | rect. | 4 | 6 |
| 371 | 190.45 | wind | 3 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 372 | 190.46 | wind | 3 | 90 | < th | dose independent | rect. | 20 | 23 |
| 377 | 190.47 | radiation | 40 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 385 | 190.49 | atmosphere | 1005 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 450 | 190.62 | wind | 1 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 454 | 190.64 | wind | 3 | 90 | < th | dose independent | rect. | 15 | 22 |
| 457 | 190.65 | wind | 3 | 90 | < th | dose independent | rect. | 13 | 23 |
| 481 | 190.70 | wind | 3 | 10 | > th | dose independent | rect. | 9 | 15 |
| 482 | 190.70 | wind | 3 | 90 | > th | dose independent | rect. | 15 | 23 |
| 510 | 190.76 | atmosphere | 1005 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 511 | 190.76 | wind | 3 | 90 | > th | dose independent | rect. | 17 | 23 |
| 534 | 190.81 | wind | 7 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 541 | 190.84 | radiation | 20 | 4320 | > th | dose independent | sin | 11 | NA |
| 557 | 190.88 | wind | 3 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 559 | 190.89 | wind | 3 | 90 | < th | dose independent | rect. | 5 | 19 |
| 560 | 190.89 | wind | 3 | 90 | < th | dose independent | rect. | 9 | 23 |
| 562 | 190.90 | wind | 3 | 90 | > th | dose independent | rect. | 23 | 23 |
| 621 | 191.04 | wind | 3 | 90 | < th | dose independent | no | NA | NA |
| 625 | 191.05 | wind | 5 | 90 | > th | dose independent | rect. | 17 | 21 |
| 636 | 191.06 | wind | 3 | 90 | > th | dose independent | rect. | 20 | 19 |
| 641 | 191.07 | wind | 3 | 90 | < th | dose independent | rect. | 5 | 23 |
| 653 | 191.11 | wind | 3 | 90 | > th | dose independent | no | NA | NA |
| 669 | 191.15 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 721 | 191.26 | atmosphere | 995 | 720 | > th | dose dependent | rect. | 24 | 2 |
| 733 | 191.29 | wind | 1 | 90 | > th | dose dependent | sin | 6 | NA |
| 829 | 191.47 | wind | 3 | 90 | < th | dose independent | rect. | 11 | 12 |
| 831 | 191.47 | wind | 3 | 10 | > th | dose independent | rect. | 9 | 21 |
| 874 | 191.54 | wind | 5 | 90 | < th | dose dependent | rect. | 5 | 19 |
| 894 | 191.59 | wind | 3 | 10 | > th | dose independent | rect. | 9 | 13 |
| 924 | 191.63 | wind | 1 | 90 | > th | dose dependent | rect. | 4 | 11 |
| 986 | 191.73 | wind | 9 | 90 | < th | dose dependent | sin | 6 | NA |