Os04g0147200 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0147200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.97	(0.173)	R²	:	0.13
β₁	:	-6.34	(1)	R²_dD	:	3.11	R²_D	:	-4.29
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	78.9	(12.7)	R²_dE	:	104	R²_E	:	-101
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	-459	(75.5)	R²_dD*E	:	101	R²_D*E	:	-104
γ₁	:	-0.0913	(0.0933)	R²_dN8	:	0.00245	R²_N8	:	-1.34
σ	:	0.817
deviance	:	307.49
__

_____

C
peak time of C	:	--
E
wheather	:	atmosphere
threshold	:	999.9
memory length	:	67
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	rect.
peak or start time of G	:	0.0126
open length of G	:	6.01

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
304.54	0.82	3.97	-6.32	0.214	79	-0.207	-459	-0.0845	13.4	1000	83	0.000615	6.02
329.46	0.852	2.95	-0.301	0.216	1.85	-0.193	--	-0.0843	13.4	1000	83	0.000615	6.02
304.7	0.813	3.97	-6.32	0.214	78.9	--	-458	-0.0857	13.3	999.9	71	0.00759	6.02
329.55	0.845	2.95	-0.31	0.222	1.87	--	--	-0.0846	13.3	1000	69	0.0166	6.33
307.49	0.817	3.97	-6.34	--	78.9	--	-459	-0.0913	--	999.9	67	0.0126	6.01
349.16	0.876	2.96	-0.239	0.157	--	-0.315	--	-0.11	12.8	--	--	--	--
349.48	0.875	2.96	-0.251	0.162	--	--	--	-0.112	11.8	--	--	--	--
330.21	0.846	2.95	-0.325	--	2.01	--	--	-0.0841	--	999.9	360	0.000793	6.88
332.1	0.853	2.95	--	0.22	1.82	--	--	-0.0518	13.3	1000	55	0.225	6.42
351.12	0.876	2.96	-0.256	--	--	--	--	-0.114	--	--	--	--	--
351.14	0.877	2.95	--	0.165	--	--	--	-0.0844	11.9	--	--	--	--
333.21	0.85	2.95	--	--	2.02	--	--	-0.0454	--	1000	361	0.0106	6.67
352.86	0.877	2.96	--	--	--	--	--	-0.086	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	304.63	atmosphere	1000	90	< th	dose independent	rect.	24	6
2	304.69	atmosphere	1000	10	< th	dose independent	rect.	1	6
7	305.21	atmosphere	1000	30	< th	dose dependent	rect.	24	7
25	311.29	atmosphere	1000	10	< th	dose independent	rect.	24	11
26	311.32	atmosphere	1000	270	< th	dose dependent	rect.	1	1
27	311.50	atmosphere	1000	270	< th	dose independent	rect.	1	2
44	313.68	atmosphere	1000	720	< th	dose independent	rect.	22	4
63	316.13	atmosphere	1000	90	< th	dose dependent	rect.	24	9
130	318.92	atmosphere	1000	10	< th	dose dependent	rect.	24	11
131	318.97	atmosphere	1000	270	< th	dose independent	sin	8	NA
155	319.79	atmosphere	1000	90	< th	dose dependent	rect.	3	3
158	319.87	atmosphere	1000	270	> th	dose independent	sin	8	NA
160	319.93	atmosphere	1000	90	< th	dose independent	rect.	3	3
173	320.32	atmosphere	1000	10	< th	dose dependent	rect.	10	1
186	320.44	atmosphere	1000	90	> th	dose independent	sin	6	NA
215	320.99	atmosphere	1000	10	< th	dose independent	rect.	9	1
223	321.01	atmosphere	1000	10	> th	dose independent	sin	6	NA
247	321.49	atmosphere	1000	90	< th	dose independent	rect.	3	7
286	322.34	wind	9	10	> th	dose dependent	rect.	15	3
313	322.79	wind	9	90	> th	dose independent	rect.	17	2
314	322.79	wind	9	90	> th	dose dependent	rect.	17	2
324	322.91	wind	9	10	> th	dose dependent	rect.	17	1
547	325.12	wind	9	10	> th	dose dependent	sin	13	NA
563	325.26	atmosphere	1000	90	< th	dose independent	rect.	4	1
572	325.29	atmosphere	1000	90	< th	dose dependent	rect.	4	1
605	325.64	atmosphere	1000	720	> th	dose independent	rect.	19	9
606	325.65	wind	9	90	> th	dose independent	rect.	16	10
620	325.70	atmosphere	1000	90	< th	dose dependent	rect.	3	7
769	327.11	atmosphere	1000	720	> th	dose independent	rect.	23	7
937	328.16	wind	9	90	> th	dose independent	sin	14	NA
970	328.40	atmosphere	1000	30	< th	dose dependent	sin	7	NA