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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0141400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Concanavalin A-like lectin/glucanase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0335) R2 : 1.8e-05
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00639 (0.0705) R2dN8 : 2.32e-05 R2N8 : 1.8e-05
σ : 0.631
deviance : 182.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.93 0.573 2.86 -0.137 0.244 0.951 -0.533 -5.12 0.0292 18.5 79.89 106 9 0.75
166.16 0.6 2.88 -0.17 0.251 1.3 -0.311 -- 0.0128 17.9 80 125 9.03 0.733
149.62 0.57 2.87 -0.131 0.241 0.946 -- -4.96 0.0266 18.4 79.77 104 9.01 0.762
165.27 0.599 2.88 -0.167 0.232 1.37 -- -- 0.0114 18.3 78.58 69 9.52 0.2
152.56 0.575 2.86 -0.14 -- 0.877 -- -4.95 0.0195 -- 79.84 104 9.03 0.738
179.36 0.628 2.88 -0.213 0.19 -- -0.224 -- -0.0249 16.7 -- -- -- --
179.47 0.627 2.88 -0.215 0.191 -- -- -- -0.0261 17.1 -- -- -- --
167.61 0.603 2.87 -0.183 -- 1.33 -- -- 0.00305 -- 78.55 73 9.52 0.0423
165.99 0.6 2.87 -- 0.242 1.38 -- -- 0.0311 18.4 78.19 68 9.53 0.212
181.38 0.629 2.88 -0.222 -- -- -- -- -0.031 -- -- -- -- --
180.69 0.629 2.88 -- 0.194 -- -- -- -0.0022 17 -- -- -- --
168.49 0.605 2.87 -- -- 1.35 -- -- 0.0237 -- 78.5 70 9.52 0.0268
182.68 0.631 2.87 -- -- -- -- -- -0.00639 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 154.16 humidity 80.0 90 > th dose independent rect. 9 1
2 154.66 atmosphere 1010.0 90 < th dose dependent rect. 8 1
14 157.05 humidity 70.0 90 > th dose dependent rect. 9 1
48 160.53 atmosphere 1005.0 90 < th dose independent rect. 8 1
78 163.10 radiation 1.0 90 < th dose independent rect. 8 1
81 163.10 radiation 1.0 90 < th dose dependent rect. 8 1
95 163.17 temperature 25.0 10 < th dose independent rect. 8 2
103 163.42 wind 3.0 10 > th dose independent rect. 9 1
121 163.92 wind 9.0 10 > th dose dependent sin 12 NA
129 164.24 temperature 20.0 30 > th dose independent rect. 9 1
143 165.15 humidity 50.0 30 > th dose independent rect. 10 23
167 165.61 radiation 10.0 10 > th dose independent rect. 9 1
168 165.74 wind 7.0 10 < th dose independent rect. 9 1
173 165.83 wind 9.0 10 > th dose dependent rect. 15 7
199 165.85 wind 9.0 10 > th dose dependent rect. 15 5
212 166.39 radiation 1.0 10 > th dose dependent rect. 17 2
223 166.40 radiation 1.0 270 < th dose dependent rect. 6 1
224 166.47 atmosphere 1000.0 30 > th dose independent rect. 10 23
227 166.60 wind 9.0 10 < th dose independent rect. 10 23
228 166.61 wind 1.0 30 > th dose dependent rect. 9 1
273 166.86 radiation 40.0 30 < th dose independent rect. 9 1
280 167.08 humidity 90.0 30 < th dose independent rect. 9 1
282 167.09 temperature 10.0 30 > th dose independent rect. 9 1
284 167.09 temperature 10.0 1440 > th dose independent rect. 10 1
289 167.09 atmosphere 995.0 30 > th dose independent rect. 9 1
290 167.09 atmosphere 995.0 1440 > th dose independent rect. 10 1
295 167.09 precipitation 0.1 30 < th dose independent rect. 9 1
296 167.09 temperature 10.0 30 > th dose independent rect. 10 23
297 167.09 temperature 10.0 1440 > th dose independent rect. 11 23
301 167.09 precipitation 0.1 30 < th dose dependent rect. 9 1
311 167.10 atmosphere 1010.0 270 < th dose dependent rect. 6 1
325 167.29 precipitation 0.1 30 < th dose independent rect. 10 23
327 167.29 precipitation 0.1 30 < th dose dependent rect. 10 23
341 167.57 wind 3.0 30 > th dose independent rect. 6 5
423 168.02 temperature 30.0 90 < th dose dependent rect. 8 2
425 168.03 temperature 10.0 10 > th dose dependent rect. 9 1
432 168.15 humidity 50.0 1440 > th dose independent rect. 10 1
445 168.31 humidity 50.0 30 < th dose dependent rect. 17 19
493 168.41 humidity 50.0 30 < th dose independent rect. 17 19
497 168.42 humidity 50.0 30 < th dose dependent rect. 17 1
536 168.52 humidity 50.0 30 < th dose independent rect. 17 1
556 168.56 radiation 10.0 30 > th dose independent rect. 17 1
571 168.58 humidity 90.0 270 > th dose dependent rect. 6 1
573 168.59 temperature 30.0 90 < th dose independent rect. 10 22
574 168.60 atmosphere 1000.0 10 < th dose independent rect. 17 1
587 168.60 atmosphere 1000.0 10 < th dose dependent rect. 17 1
653 168.96 wind 9.0 10 > th dose independent rect. 18 1
657 168.96 wind 9.0 10 > th dose dependent rect. 18 1
663 169.00 wind 1.0 90 > th dose independent rect. 10 22
716 169.21 atmosphere 1015.0 90 < th dose dependent rect. 3 7
719 169.23 wind 9.0 30 > th dose independent rect. 15 11
738 169.26 wind 9.0 30 > th dose independent rect. 15 7
747 169.28 wind 9.0 30 > th dose independent rect. 15 5
751 169.28 atmosphere 1010.0 10 < th dose dependent rect. 4 7
823 169.57 temperature 25.0 30 < th dose independent rect. 6 5
870 169.66 wind 9.0 30 > th dose independent sin 13 NA
871 169.66 radiation 1.0 270 < th dose independent rect. 6 1
898 169.70 wind 9.0 90 < th dose dependent rect. 8 2
909 169.72 atmosphere 1015.0 10 < th dose dependent rect. 2 9
916 169.74 atmosphere 1015.0 90 < th dose dependent rect. 1 9
944 169.77 wind 7.0 90 < th dose independent rect. 16 18
953 169.79 humidity 80.0 270 > th dose independent rect. 5 5