Os04g0141200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Concanavalin A-like lectin/glucanase domain containing protein.
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Os04g0141200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Concanavalin A-like lectin/glucanase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 137.47 | 0.551 | 2.81 | 0.147 | 0.139 | 0.698 | -0.0185 | 2.28 | 0.0769 | 0.138 | 46.08 | 88 | -- | -- |
| 142.09 | 0.559 | 2.79 | 0.123 | 0.0982 | 0.306 | -0.402 | -- | 0.1 | 0.439 | 47.02 | 87 | -- | -- |
| 137.47 | 0.546 | 2.81 | 0.148 | 0.139 | 0.695 | -- | 2.29 | 0.0762 | 0.13 | 46.08 | 88 | -- | -- |
| 142.75 | 0.56 | 2.79 | 0.139 | 0.101 | 0.304 | -- | -- | 0.103 | 23.5 | 47.02 | 87 | -- | -- |
| 138.28 | 0.548 | 2.8 | 0.147 | -- | 0.624 | -- | 2.46 | 0.0837 | -- | 47.02 | 88 | -- | -- |
| 144.76 | 0.564 | 2.79 | 0.121 | 0.012 | -- | -0.41 | -- | 0.0998 | 1.34 | -- | -- | -- | -- |
| 145.42 | 0.565 | 2.79 | 0.136 | 0.0271 | -- | -- | -- | 0.102 | 20.9 | -- | -- | -- | -- |
| 143.31 | 0.56 | 2.79 | 0.141 | -- | 0.254 | -- | -- | 0.104 | -- | 47.02 | 88 | -- | -- |
| 143.26 | 0.561 | 2.79 | -- | 0.102 | 0.303 | -- | -- | 0.0873 | 23.6 | 47.02 | 87 | -- | -- |
| 145.46 | 0.564 | 2.79 | 0.136 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 145.9 | 0.565 | 2.79 | -- | 0.027 | -- | -- | -- | 0.0874 | 21.3 | -- | -- | -- | -- |
| 143.84 | 0.56 | 2.79 | -- | -- | 0.251 | -- | -- | 0.088 | -- | 47.02 | 88 | -- | -- |
| 145.94 | 0.564 | 2.79 | -- | -- | -- | -- | -- | 0.0873 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 130.87 | radiation | 40.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 2 | 132.69 | radiation | 30.0 | 90 | > th | dose dependent | rect. | 10 | 1 |
| 4 | 134.03 | humidity | 50.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 96 | 134.03 | humidity | 50.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 189 | 134.66 | wind | 7.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 190 | 134.77 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 18 | 1 |
| 201 | 135.48 | wind | 7.0 | 90 | > th | dose independent | rect. | 18 | 1 |
| 205 | 137.02 | atmosphere | 1010.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 207 | 137.09 | temperature | 30.0 | 90 | > th | dose independent | rect. | 10 | 1 |
| 208 | 137.12 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 11 | 1 |
| 250 | 137.75 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 19 | 1 |
| 260 | 137.75 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 19 | 1 |
| 271 | 137.81 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 274 | 137.89 | wind | 5.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 301 | 138.12 | humidity | 50.0 | 30 | < th | dose independent | rect. | 17 | 21 |
| 318 | 138.25 | humidity | 80.0 | 10 | > th | dose independent | rect. | 20 | 1 |
| 338 | 138.28 | wind | 5.0 | 10 | < th | dose independent | rect. | 20 | 1 |
| 343 | 138.35 | humidity | 50.0 | 30 | < th | dose dependent | rect. | 17 | 1 |
| 364 | 138.43 | humidity | 50.0 | 30 | < th | dose independent | rect. | 17 | 1 |
| 365 | 138.43 | radiation | 40.0 | 10 | > th | dose independent | rect. | 11 | 1 |
| 384 | 138.44 | radiation | 10.0 | 30 | > th | dose independent | rect. | 17 | 1 |
| 397 | 138.44 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 420 | 138.52 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 20 | 16 |
| 421 | 138.53 | atmosphere | 1005.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 426 | 138.56 | wind | 9.0 | 270 | > th | dose dependent | rect. | 17 | 5 |
| 446 | 138.60 | wind | 9.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 448 | 138.62 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 6 | 6 |
| 449 | 138.62 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 473 | 138.69 | radiation | 40.0 | 90 | > th | dose dependent | sin | 8 | NA |
| 477 | 138.69 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 24 | 12 |
| 706 | 139.08 | wind | 9.0 | 270 | < th | dose independent | sin | 12 | NA |
| 709 | 139.09 | wind | 9.0 | 270 | > th | dose independent | sin | 12 | NA |
| 710 | 139.10 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 716 | 139.16 | wind | 9.0 | 270 | > th | dose independent | sin | 15 | NA |
| 725 | 139.20 | radiation | 40.0 | 90 | < th | dose independent | rect. | 21 | 22 |
| 728 | 139.23 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 729 | 139.25 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 731 | 139.26 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 10 |
| 739 | 139.26 | wind | 9.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 744 | 139.27 | wind | 9.0 | 270 | > th | dose independent | rect. | 16 | 3 |
| 754 | 139.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 756 | 139.28 | temperature | 30.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 757 | 139.28 | humidity | 50.0 | 30 | > th | dose independent | rect. | 20 | 1 |
| 762 | 139.28 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 764 | 139.28 | radiation | 1.0 | 30 | < th | dose independent | rect. | 20 | 1 |
| 769 | 139.28 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 20 | 1 |
| 770 | 139.28 | temperature | 10.0 | 30 | > th | dose independent | rect. | 21 | 23 |
| 772 | 139.28 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 777 | 139.28 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 779 | 139.32 | humidity | 60.0 | 10 | < th | dose independent | sin | 9 | NA |
| 780 | 139.32 | wind | 9.0 | 270 | > th | dose independent | rect. | 15 | 19 |
| 809 | 139.34 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 841 | 139.37 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 20 | 1 |
| 875 | 139.38 | radiation | 30.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 916 | 139.43 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 925 | 139.45 | wind | 1.0 | 30 | > th | dose dependent | rect. | 20 | 1 |
| 933 | 139.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 936 | 139.49 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 940 | 139.49 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 946 | 139.49 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 947 | 139.49 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 967 | 139.49 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 22 | 23 |